1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCCGTGCTATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACATGACGACAAgtatgtggcatcctcaactattttccttctatctgagatacactttgtagttataagagtctcttaccgcttggttaacttgtgtag
species | Arabidopsis thaliana |
transcript | AT1G15970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACATGACGACAA GAAGCTTTTTGAGTTATTATGCCTCTCTGGTGCTCTAGCCGA-CTCTCATGEST: gi|124965756|gb|EL039916.1|EL039916
genomic: TATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACATGACGACAAgtatgtggca ... acttgtgtagGAAGCTTTTTGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACTCTCATG
EST: TGGGGAGTTCCTGTACATGACGACAA GAAGCTTTTTGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACTEST: gi|164231498|gb|EL984070.1|EL984070
genomic: TGGGGAGTTCCTGTACATGACGACAAgtatgtggca ... acttgtgtagGAAGCTTTTTGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACT
EST: TATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACATGACGACAA GAAGCTTTTTGAGTTATTAT
genomic: TATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACATGACGACAAgtatgtggca ... acttgtgtagGAAGCTTTTTGAGTTATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCGTGCTATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACATGACGACAAgtatgtggcatcctcaactattttccttctatctgagatacactttgtagttataagagtctcttaccgcttggttaacttgtgtag
- - - - - - - - - - - - CGAAGA