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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGAGCTGGAAAAACTTCTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTgtaagattctctttgtaaataaatgaaagtgtaacacttacgcagacagacacaagctatgcatttttgttgttgttgttgtacag

Basic information

species Arabidopsis thaliana
transcript AT1G15960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os06g46310.1 (Oryza sativa), 5'ss of exon 3
AAAAAGAGCTGGAAAAACTTCTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTgtaagattctc---tttgtaaataaatgaaagtgtaacacttacgcagacaga-cacaagctat-gcatttttgttgttgttgttgtacag
||||| || ||||| ||| | || |||||| |||| || |||||||||||||| ||||| || |||||||||||||| ||||||||       |||||   | | |   | |  ||    ||  || |  || ||  | | |  | || | |  | |||  |        
AAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTgtaagatagctggatttgttgttcactcctatta-aatgagtattcacagtgatcatgaccaaaagaatctctcatcttgcag--------

upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 3
AAAAAGAGCTGGAAAAACTTCTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTgtaagatt----------ctctttgtaaataaatga-aagtgtaacacttacgcagacagacacaagctatgcatttttgttgttgttgttgtacag
||||| || ||||| ||||| ||||||||| |||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||          || ||  |  ||        ||| |  | ||| |    |  |    |  ||   ||  ||| ||| ||| ||  | |||
AAAAACAGTTGGAAGAACTTATTCTCATACATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaacggattcacttttcttcgattctcattgagtatttcccttccatctattg-tgtattcttcacaaattttttggtgt-gtcttgcag

upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 3
AAAAAGAGCTGGAAAAACTTCTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTgtaagat----------tctctttgtaaataaatgaaagtgtaacacttacgcagacagacacaagctatgcatttttgttgttgttgttgtacag
| ||  |||||||||||||| ||  ||||| | || |||||||||||||| || ||||| || || || || ||||||||||||||          || |||| |    |||| |||| | || |  | | | |||| | | | |||   | | ||| |     |   | | |||
AGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTgtaagatcatttattcatcactttattctgaaataaaag-gaaatatattc-ctgacatagatatgcttatcgtatttttcacaatgact-tgcag

upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 3
AAAAAGAGCTGGAAAAACTTCTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTgtaagatt-----ctctttgtaaataaatgaaagtgtaacacttacgcagacagacacaagctatgcatttttgttgttgttgttgtacag
|  || |||||||||||||| ||  ||||  | || ||||| |||||||| || ||||| || |||||||||||||| ||||||| |      |||| ||   |   |  |    ||  |  | | |   |  |      |      | | | ||||  | |   | |||
AGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATTgtaagactgagacttcttagttcctttttttactactataaaatgctcttcctaattatgccctcatctatattttgtgatcgccttgcag