1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGCTGAGGAACGGCTCCACTGGCGATCTTTCTTGGTTAAGTTGGGAGCAGATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAAgtacatcaatctacctattgtgtcattttcgagaaaactatgaaaccaaactaacagcatttttggggtatataagtaacagagaggttgttgtgcag
species | Arabidopsis thaliana |
transcript | AT1G15370.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAA GTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGTEST: gi|152035004|gb|BP841901.2|BP841901
genomic: GATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAAgtacatcaat ... tgttgtgcagGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGT
EST: GATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAA GTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCGTGTEST: gi|164019194|gb|ES195872.1|ES195872
genomic: GATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAAgtacatcaat ... tgttgtgcagGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGT
EST: CTCGTTGCTTGCCACAA GTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGTEST: gi|152035520|gb|BP856874.2|BP856874
genomic: CTCGTTGCTTGCCACAAgtacatcaat ... tgttgtgcagGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGT
EST: GATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAA GTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGTEST: gi|86076188|gb|DR371945.1|DR371945
genomic: GATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAAgtacatcaat ... tgttgtgcagGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGT
EST: ATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAA GTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGT
genomic: ATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAAgtacatcaat ... tgttgtgcagGTCGGTTTATATCGTGTACACAATGCTAGGGGATGTTAGCATCTTCCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTGAGGAACGGCTCCACTGGCGATCTTTCTTGGTTAAGTTGGGAGCAGATAATCTCAAAGGCGTTAAAAATGAGGAGCTTCTCGTTGCTTGCCACAAgtacatcaatctacctattgtgtcattttcgagaaaactatgaaaccaaactaacagcatttttggggtatataagtaacagagaggttgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT