Sequence
atgc intronic sequence ATGC exonic sequenceATAAGGATAGGGAATTATCTGAAGGACAAGCTGAAATCAAAGCTTTGAGGTTGTCTGAACGACAAAGAGAGAAGGCTGTTGAAGAGgtttatgcccttacactttaagcttccattacataaacaaagtatttagcttgagtggcattgtgatattcctatttatagaatatgtagtcatgtagcctgagcttggttttacttgtttggaattatgtcatataaagtttctctctttacactctctgtgtactgacttctctgctattttatttgagtgctgaag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G14840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 2
ATAAGGATAGGGAATTATCTGAAGGACAAGCTGAAATCAAAGCTTTGAGGTTGTCTGAACGACAAAGAGAGAAGGCTGTTGAAGAGgtttatgcccttacactttaagcttccattacataaacaaagtatttagcttgagtggcattgtgatattcctatttatagaatatgtagtcatgtagcctgagcttggttttacttgtttggaattatgtcatataaagtttctctctttacactctctgtgtactgacttctctgctattttatttgagtgctgaag
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ACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAGgtt---accactgatttttcaattattgtta-attattgctgttctttgtttgcattgattgatggtgt--ctttttgtgaagattgtcatgaattatcc-gttttt--------------------------------------------------------------------------------------------
upper sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 2
ATAAGGATAGGGAATTATCTGAAGGACAAGCTGAAATCAAAGCTTTGAGGTTGTCTGAACGACAAAGAGAGAAGGCTGTTGAAGAGgtttatgcccttacactttaagcttccattacataaacaaagtatttagcttgagtggcattgtgatattcctatttatagaatatg--tagtcatgtagcctgagcttggttttacttgtttggaattatgtcatataaagtttctctctttacactctctgtgtactgacttctctgctattttatttgagtgctgaag
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ATAAGGACAGAGAATTATCGGAAGCGCAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTCAGAGAAAAGGCCGTTGAAGAGgtt---accactaatttttcaattattgtta-attgtttctgttctttgtttgtaatgattgatggtgtctttttttgaagattatcatgaattatccattttt-------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124965501|gb|EL039684.1|EL039684EST: AGGTTGTCTGAACGACAAAGAGAGAAGGCTGTTGAAGAG CTCACTGAAGAGTTGGGAAAGATGGCGGAAAAACTCAAACTTATTGAAAAT
genomic: AGGTTGTCTGAACGACAAAGAGAGAAGGCTGTTGAAGAGgtttatgccc ... agtgctgaagCTCACTGAAGAGTTGGGAAAGATGGCGGAAAAACTCAAACTTATTGAAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAGGATAGGGAATTATCTGAAGGACAAGCTGAAATCAAAGCTTTGAGGTTGTCTGAACGACAAAGAGAGAAGGCTGTTGAAGAGgtttatgcccttacactttaagcttccattacataaacaaagtatttagcttgagtggcattgtgatattcctatttatagaatatgtagtcatgtagcctgagcttggttttacttgtttggaattatgtcatataaagtttctctctttacactctctgtgtactgacttctctgctattttatttgagtgctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA