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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATATGCTTGGGTTGTTGCTAATCATGCGCTCGGTTCGCTTGGAGGTGAACCTTTAAAAACAACGGGAATTGTTGAACTCGGTGGGGCTTCTGCCCAGgttttatctcttgtcaaatctgttattgataagaaaatatgcgtatgatgccatttatcaggtttaggataaacctttacttgtatggtaatagattaattgtgagtgatgactgtttattcattcgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G14230.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G05750.1 (Glycine max), 5'ss of exon 2
TGTATATGCTTGGGTTGTTGCTAATCATGCGCTCGGTTCGCTTGGAGGTGAACCTTTAAAAACAACGGGAATTGTTGAACTCGGTGGGGCTTCTGCCCAGgttttatctcttgtcaaatctgttattgataagaaaatatgcgtatgatgccatttatcaggtttaggataaacctttacttgtatggtaatagattaattgtgagtgatgactgtttattcattcgtttag
 || ||||||||||||||||||||| |||| || |   | ||||||||||| |||||  ||||||| || ||| ||||||| ||||| |||||||| |||||   |   | |       | |||||  | ||    || |  ||  ||| | | ||||    | ||   ||||  ||||           ||   || | ||  | ||     |  |||             
AGTGTATGCTTGGGTTGTTGCTAATTATGCACTTGACACTCTTGGAGGTGATCCTTTGGAAACAACTGGGATTATTGAACTTGGTGGTGCTTCTGCTCAGgtacaactacatagttg--cagttat--acaattttattt-tgttggatccaaattatt---tatactgtaaaattttat----------attatttgactgcaaatg-cagttactta-------------

upper sequence: AT1G14230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G11980.1 (Glycine max), 5'ss of exon 2
TGTATATGCTTGGGTTGTTGCTAATCATGCGCTCGGTTCGCTTGGAGGTGAACCTTTAAAAACAACGGGAATTGTTGAACTCGGTGGGGCTTCTGCCCAGgttttatctc----ttgtcaaatctgttattg-ataagaaaatatgcgtatgatgccat-ttatcaggtttaggataa-------acctttactt-gtatggtaatagattaattgtgagtgatgactgtttattcattcgtttag----------------------------------------------------
  | ||||||||||||||||||||| |||| || ||  | ||||||||||| |||||  |||| || || ||| ||||||| ||||| |||||||| |||||   |  ||    |||   | |     |||  ||        || |  || ||   |   | | |  |||   || |        |  |||||| ||  | |   |    |||  |     |  |   |  |    |  |  |||                                                    
AATGTATGCTTGGGTTGTTGCTAATTATGCACTTGGCACTCTTGGAGGTGATCCTTTGGAAACTACTGGGATTATTGAACTTGGTGGTGCTTCTGCTCAGgtacaacttcatagttgctgattacacaattttattttgttcgatccaaattattttacactgtaaaatttgatatgatttgactgcaattacttagtgagttttaaaggcaatgctttagaaaaaagctccacctttatgactaggttatttcatactgctgggaaacatgccaaatggatttctaccttgttttag

upper sequence: AT1G14230.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0026g02490.t01 (Vitis vinifera), 5'ss of exon 2
TGTATATGCTTGGGTTGTTGCTAATCATGCGCTCGGTTCGCTTGGAGGTGAACCTTTAAAAACAACGGGAATTGTTGAACTCGGTGGGGCTTCTGCCCAGgttttatctcttgtcaaatctgtta-ttgataagaaaatatgcgtatgatgccatttatcaggtttaggataaacct--ttacttgtatggtaatagattaattgtgagtgatgactgtttattcattcgtttag
  ||||||||||||||||||| |||||||| || ||    ||||||||||| |||    ||||||| || ||| |||| || ||||||||||| || |||||| | ||  ||  |  |||||| | |||| |||    ||    | | |||| |  |     |   |   | | |||  || ||| | |  ||     ||                                   
AATATATGCTTGGGTTGTTGCAAATCATGCACTTGGCAGTCTTGGAGGTGATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGgttgtttcattttccctatctgtaaattgacaaggtgttacaaattttatgctaaattgtgagggcatttttatcctgtttgcttatgttatatggtgtt-----------------------------------