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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAAGTATTAGAAGCAACTCAACCACCTGAATTCCAACGGTGTATGGTCCCATTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGgtaattgtattttcctttggtttgctaattctgtgaatcatgaatgatgggaacaattcttacaagattgaaatgcgtgatattttgattgaatccataagaacaaagctttgtgattatttcgaaagcttgaatctttgtataagcaagctcaagaaagaacaaaaaggttgagactttttttattttgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G13460.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G01400.1 (Glycine max), 5'ss of exon 2
AGAGGAAGTATTAGAAGCAACTCAACCACCTGAATTCCAACGGTGTATGGTCCCATTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGgtaattgtattttcctttggtttgctaattctgtgaatcatgaatgatgggaacaattcttacaagattgaaatgcg--tgatattttgattgaatccataagaacaaagctttgtgattatttcgaaagcttgaatctttgtataagcaagctcaagaaagaacaaaaaggttgagactttttttattttgttttgcag
 || ||||| ||||||||||||||||| || |||||||| || |||||||| ||||| ||||| |   |||| || |||||||| || |  ||||||||||||  || ||| | |  |  |||      ||| ||  || |      |     |  || || || ||  ||||| |   |||  ||   | | | ||  |  |  |||                                                                                            
GGAAGAAGTCTTAGAAGCAACTCAACCCCCAGAATTCCAGCGCTGTATGGTGCCATTATTTCGTCGCATTGCACGTTGTTTGAATAGCCCTCATTTTCAGgta--tgaattcttcgatacttt------tctctggctccttttctgtttctcctcttatttcatgagggaaatacacctgactttcaaactaattctctctgg-caac-------------------------------------------------------------------------------------------

upper sequence: AT1G13460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G37430.1 (Glycine max), 5'ss of exon 2
AGAGGAAGTATTAGAAGCAACTCAACCACCTGAATTCCAACGGTGTATGGTCCCATTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGgtaattgtattttcctttggtttgctaattctgtgaatcatgaatgatgggaacaattcttacaagattgaaatgcgtg-atattttgattgaatccataagaacaaagctttgtgattatttcgaaagcttgaatctttgtataagcaagctcaagaaagaacaaaaaggttgagactttttttattttgttttgcag
 || ||||| || |||||||||||||| || ||||| || || |||||||| ||||||||||| |   |||| || |||||||| || |  |||||||||||  ||| ||||| |  |  |||       || ||  || |      |     |  || || || |||  |||| |      ||||  | | ||| |       |||                                                                                            
GGAAGAAGTCTTGGAAGCAACTCAACCCCCAGAATTTCAGCGTTGTATGGTGCCATTGTTTCGTCGCATTGCACGTTGTTTGAATAGCCCTCATTTTCAGgt--ttgaatttttcaatacttt------cctctggctccttttctgtttctcctcttatttcatgatgaaaatacacctgaatttcaaattaattctctctggcaac-------------------------------------------------------------------------------------------

upper sequence: AT1G13460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0010g02350.t01 (Vitis vinifera), 5'ss of exon 1
AGAGGAAGTATTAGAAGCAACTCAACCACCTGAATTCCAACGGTGTATGGTCCCATTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGgtaattgtattttcctttggtttgctaattctgtgaatcatgaatgatgggaacaattcttacaagattgaaatgcgtgatattttgattgaatccataagaacaaagctttgtgattatttcgaaagcttgaatctttgtataagcaagctcaagaaagaacaaaaaggttgagactttttttattttgttttgcag
||| ||| | ||||||||||| || ||| | |||||||| || |||||||| || ||||||| |||| ||||||| || ||||||||    || || |||||| |  | ||||   |  ||||  |  |  | ||  |||   ||      |  ||||  |     | || | | |    | || ||    |      ||      |                                                                                           
AGAAGAAATTTTAGAAGCAACCCAGCCAGCAGAATTCCAGCGCTGTATGGTGCCCTTGTTTCACCAAATTGCTCGTTGCTTGAACAGCTCACACTTCCAGgta-tcatgttttaaat--gtttcttgctgttctgtctca---atctatccactaatttctgtgcaaatgcatttc----tgttctggcatatgtttcaaatgttgaata----------------------------------------------------------------------------------------