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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAGTTCTCAGGACTTCGAAACTCCTCTGCTCTTCCCTTTGCCAAGAGATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcctttttcacccactcctctctattgctcctgtgttatatatcttatggtgcaatcttgtaaactcaagagctgtttcttgtgtctaatgccaccattgtagatctatccatgatgaacaaggctgcatggcatgatcagccatgattaaccatatacgttttttttttctgtctctgtgttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G12900.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116451131|gb|EG493723.1|EG493723
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATATAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125209775|gb|EL224729.1|EL224729
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|124888672|gb|EH967574.1|EH967574
EST:     TTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: TTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|164035484|gb|ES182004.1|ES182004
EST:     CTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: CTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|116442534|gb|EG485126.1|EG485126
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125292425|gb|EL306510.1|EL306510
EST:     CGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCG
genomic: CGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCG
EST: gi|125192141|gb|EL207095.1|EL207095
EST:     CCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: CCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125277968|gb|EL292053.1|EL292053
EST:     CCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: CCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125259046|gb|EL273131.1|EL273131
EST:     TTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: TTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125227581|gb|EL241666.1|EL241666
EST:     TTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: TTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|116473085|gb|EG515677.1|EG515677
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|124908523|gb|EH982603.1|EH982603
EST:     TCTTCTTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCTA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGC
genomic: TCTTC-TTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGC-Agtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGC
EST: gi|124862917|gb|EH947354.1|EH947354
EST:     TCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: TCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125017256|gb|EL089525.1|EL089525
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAG
EST: gi|124746505|gb|EH836833.1|EH836833
EST:     GTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGTCAAGATAAAG
genomic: GTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125283363|gb|EL297448.1|EL297448
EST:     CAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: CAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|124731876|gb|EH823278.1|EH823278
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125314047|gb|EL328132.1|EL328132
EST:     CTTCCGATGAGTTTTGTTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: CTTCCGATGAG-TTTG-TTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125273219|gb|EL287304.1|EL287304
EST:     CTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: CTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|124886321|gb|EH965223.1|EH965223
EST:     AGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: AGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|124891932|gb|EH970834.1|EH970834
EST:     AAACTTCTGCA                         ATGAGAAGCAGTGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: AAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125287568|gb|EL301653.1|EL301653
EST:     AGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGAATAAA
genomic: AGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGA-TAAA
EST: gi|125023695|gb|EL095964.1|EL095964
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTG
EST: gi|125225364|gb|EL239449.1|EL239449
EST:     TTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: TTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125022950|gb|EL095219.1|EL095219
EST:     TTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: TTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|124813630|gb|EH898496.1|EH898496
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGA
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGA
EST: gi|125023792|gb|EL096061.1|EL096061
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGG
EST: gi|125147769|gb|EL181814.1|EL181814
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTCCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAAGGGG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAA-GGGG
EST: gi|116473086|gb|EG515678.1|EG515678
EST:     GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: GATCTTCTTCCGATGAGTTTGTTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125038567|gb|EL110836.1|EL110836
EST:     TTTCCTTCGTCAGTTTCCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: TTTCCTTCGTCAGTTTCCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
EST: gi|125211377|gb|EL226331.1|EL226331
EST:     CCAAACTTCTGCA                         ATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG
genomic: CCAAACTTCTGCAgtgagttcct ... tgtgttgtagATGAGAAGCAATGGTGGATACAGGAAAGGGGTGACCGAGGCCAAGATAAAG