Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattcatttgatcactgagtggattttatgtttttgattttaaaattcctctcttgattgagaaatttttgagatttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G12840.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124713358|gb|EH804760.1|EH804760
EST:     ATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAA
genomic: ATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAA
EST: gi|124783142|gb|EH873024.1|EH873024
EST:     GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGAT
genomic: GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGAT
EST: gi|124889987|gb|EH968889.1|EH968889
EST:     TTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAA
genomic: TTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAA
EST: gi|124833474|gb|EH917913.1|EH917913
EST:     GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAA
genomic: GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAA
EST: gi|222358097|gb|GH718178.1|GH718178
EST:     GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAA
genomic: GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAA
EST: gi|124963007|gb|EL037371.1|EL037371
EST:     GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAAGGAG
genomic: GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAG
EST: gi|124891955|gb|EH970857.1|EH970857
EST:     TGTTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAAGGAGTTTCG
genomic: TG-TTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAGTTTCG
EST: gi|125210854|gb|EL225808.1|EL225808
EST:     TGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAAG                         TCGAACAGCTTTGTGGAAGGAGTTTCGCAAAA
genomic: TGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAA-Ggtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAA
EST: gi|124882625|gb|EH961527.1|EH961527
EST:     GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG                         TCGAACAGCTTTGTGGAAGGAGTTTCGCAAAA
genomic: GTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGgtaaaattca ... agatttgtagTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAA