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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAGGACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGgtttgcccaatcccaccatctctatccttcattactttgtctctatttcctaaggaaagattttaaaagtctttttttattcgtttgtggaaatag

Basic information

species Arabidopsis thaliana
transcript AT1G12260.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G12260.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAGGACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGgtttgc-ccaatcccaccatctctatccttcattactttgtctctatttcctaaggaaagattttaaaagtctttttttattcgtttgtggaaatag------------
|| || ||||||||  |||| || || ||  | |  || || ||  |  || |||| |||||| | ||||| |||||||||||||||||||| || ||||||  |  |  |   ||  |  |  || | |   ||   |   | | |    ||         |    ||| |     | |||   | | |   |||             
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataattaactgg-gagtataaccatgcatgcag