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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCCAATTGTTTGTCAAACAAGTCAATCCACGACAATATGTTGCTCAAATTCCTCAGgtatgcatttagagagaaggcaaacgcgtattgacttactaatctatcattgtttgtttggtgtaacgcaatttgtaatggtaatctcaatcttcttgtcctccag

Basic information

species Arabidopsis thaliana
transcript AT1G09795.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09795.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G36070.1 (Glycine max), 5'ss of exon 2
GATTGCCAATTGTTTGTCAAACAAGTCAATCCACGACAATATGTTGCTCAAATTCCTCAGgtatgcatttagagagaaggcaaacgcgtattgacttactaatctatcattgtttgtttggtgtaacgcaatttgtaatggtaatctcaatcttcttgtcctccag
 |||| |||||||  || || || |||||||| ||||| ||||||||| |||||||||||||  || ||               | | | ||  | |  |  || |||| |||    |  || || |   |     |||   | ||||  ||||    |  | |||
AATTGTCAATTGTCAGTGAAGCAGGTCAATCCTCGACAGTATGTTGCTGAAATTCCTCAGgt--gcctt---------------ctcttctttcccttttcttccatcaatgtactatatgtcta-catgaccataaatca-attctc--tcttacactgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125031500|gb|EL103769.1|EL103769
EST:     TGTTTGTCAAACAAGTCAATCCACGACAATATGTTGCTCAAATTCCTCAG                         TTACCAAATACTGAAGTTTGGTTTCAACTACCAAAAGACATTGTCAGAAAG
genomic: TGTTTGTCAAACAAGTCAATCCACGACAATATGTTGCTCAAATTCCTCAGgtatgcattt ... tgtcctccagTTACCAAATACTGAAGTTTGGTTTCAACGACCAAAAGACATTGTCAGAAAG
EST: gi|125057974|gb|EL126943.1|EL126943
EST:     GTTTGTCAAACAAGTCAATCCACGACAATATGTTGCTACAAATTCCTCAG                         TTACCAAATACTGAAGTTTG
genomic: GTTTGTCAAACAAGTCAATCCACGACAATATGTTGCT-CAAATTCCTCAGgtatgcattt ... tgtcctccagTTACCAAATACTGAAGTTTG