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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCTCAATATGTTTGCACAACTTTCTGGACCTTCGTATGCATGGCTTGTAGCGGGATACAgtgagtaccttccccttcctatatactttctttgcaactattcctgacctctcttgtgttccttccttgtcagtatcgtacgctggtttgtgttaccttt...

Basic information

species Arabidopsis thaliana
transcript AT1G08680.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08680.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ33278 (Selaginella moellendorffii), 5'ss of exon 4
GGCCCTCAATATGTTTGCACAACTTTCTGGACCTTCGTATGCATGGCTTGTAGCGGGATACAgtgagtaccttccccttcctatatactttctttgcaactattcctgacctctcttgtgttccttccttgtcagtatcgtacgctggtttgtgttaccttt
|| || ||||||||||||||||||||||  || || || |||||||||||| | ||  | ||||  |  |   | | ||  | | | ||| || |  ||   || || |  ||  ||||                                           
GGACCACAATATGTTTGCACAACTTTCTCAACTTTTGTGTGCATGGCTTGTGGTGGAGTCCAgtacg--ctaccacttttttctttgcttgctct--aatccttgcttatttcctttgtag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163979698|gb|ES130087.1|ES130087
EST:     GTTTGCACAACTTTCTGGACCTTCGTATGCATGGCTTGTAGCGGGATACA                         CCGCGAATTCAC
genomic: GTTTGCACAACTTTCTGGACCTTCGTATGCATGGCTTGTAGCGGGATACAgtgagtacct ... tgacctgcagCCGCGAATTCAC
EST: gi|125321630|gb|EL335715.1|EL335715
EST:     GTTTGCACAACTTTCTGGACCTTCGTATGCATGGCTTGTAGCGGGATACA                         CCGCGAATTCACTCAT
genomic: GTTTGCACAACTTTCTGGACCTTCGTATGCATGGCTTGTAGCGGGATACAgtgagtacct ... tgacctgcagCCGCGAATTCACTCAT