1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAGACTgtaagcttgcctttatctagattcaattctttttgggttttgctcctattcagattcagcattgatttgctatctgtttcgacatagatcgtctcaatgagaagttgattagtggaatttgatgtgatttagggcag
species | Arabidopsis thaliana |
transcript | AT1G08220.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAGACT TAATGATGAGATGAATCGGGGTTACTTTGCTGATATGAAAGAATTCAAGGAEST: gi|86073338|gb|DR369095.1|DR369095
genomic: TTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAGACTgtaagcttgc ... tttagggcagTAATGATGAGATGAATCGGGGTTACTTTGCTGATATGAAAGAATTCAAGGA
EST: TTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAGACT TAATGATGAGATGAATCGGGGTTACTTTGCTGATATGAAAGAATTCAAGGA
genomic: TTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAGACTgtaagcttgc ... tttagggcagTAATGATGAGATGAATCGGGGTTACTTTGCTGATATGAAAGAATTCAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGGGAATAAGAAAGCAATTGAAGATGAGCGTGCTAGACTgtaagcttgcctttatctagattcaattctttttgggttttgctcctattcagattcagcattgatttgctatctgtttcgacatagatcgtctcaatgagaagttgattagtggaatttgatgtgatttagggcag
- - - - AAGAAA
- - - - - - AAGCAA
- - - - - - - - - TTGAAG
- - - - - - - - - - TGAAGA
- - - - - - - - - - - AAGATG