1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TCCAGATTATACGAAAAAGCAATCTAAGAGATTTGTAGCTGGTGGCTTGGCTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAGgtttgtgagaatgtgggtagattacgttttggaatagaatctactcaccgtgaatttgataagaggctagttttgtag
species | Arabidopsis thaliana |
transcript | AT1G08190.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAG GTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGTEST: gi|125149559|gb|EL182659.1|EL182659
genomic: CTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAGgtttgtgaga ... agttttgtagGTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGT
EST: TTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAG GTGCTGCATTCTGGGGAAAGGTCCAATTCATTCTGTGAAGEST: gi|86068273|gb|DR364030.1|DR364030
genomic: CTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAGgtttgtgaga ... agttttgtagGTGCTGCATTCTGGGGAA-GGTCCAATTCATTCTGTGAAG
EST: CTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAG GTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGTEST: gi|86068274|gb|DR364031.1|DR364031
genomic: CTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAGgtttgtgaga ... agttttgtagGTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGT
EST: CTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAG GTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGT
genomic: CTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAGgtttgtgaga ... agttttgtagGTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGATTATACGAAAAAGCAATCTAAGAGATTTGTAGCTGGTGGCTTGGCTGGTCACTTGTATATGAACTCCAAGAAGTGGTTCGGTAATAAAGATCAGgtttgtgagaatgtgggtagattacgttttggaatagaatctactcaccgtgaatttgataagaggctagttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA