1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAGCTGGTACTGTGAAGTTCTTAAAGCATAAGAACACTGGGAAGATTCGTCTCGTTATGAGGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCGgtataatttctatttggactactttgtgttgtttttgagttgcatctggatctgtatttaggttactgtttccttatctagtcttatgcttctgatatttctgcag
species | Arabidopsis thaliana |
transcript | AT1G07140.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCG TTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAATGAAAAGTCATGTGEST: gi|124917155|gb|EH991029.1|EH991029
genomic: GGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCGgtataatttc ... atttctgcagTTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAATGAAAAGTCATGTG
EST: AGGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCG TTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAAEST: gi|125074490|gb|EL138410.1|EL138410
genomic: AGGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCGgtataatttc ... atttctgcagTTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAA
EST: TCTAAAACTTTGAAGATCTGTGCTAATCACTTCG TTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAATGAAAAGTCATGTG
genomic: TCTAAAACTTTGAAGATCTGTGCTAATCACTTCGgtataatttc ... atttctgcagTTAAATCGGGCATGAGTGTTCAGGAACACGTTGGGAATGAAAAGTCATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCTGGTACTGTGAAGTTCTTAAAGCATAAGAACACTGGGAAGATTCGTCTCGTTATGAGGCAATCTAAAACTTTGAAGATCTGTGCTAATCACTTCGgtataatttctatttggactactttgtgttgtttttgagttgcatctggatctgtatttaggttactgtttccttatctagtcttatgcttctgatatttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA