1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaagaaagctgatcactcttcgtaaattggtttattctgaaactaatttggaaatctccatcttttatag
species | Arabidopsis thaliana |
transcript | AT1G06690.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGACAATGGTATTGATTTTTTCGACACCGCTGAAGTTTATGGTTCCAAG TTTTCCCTGGGTGCTATAAGCTCTGAAACTCEST: gi|116456052|gb|EG498644.1|EG498644
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTC
EST: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG TTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAGEST: gi|116456053|gb|EG498645.1|EG498645
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG
EST: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG TTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAGEST: gi|124770834|gb|EH860964.1|EH860964
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAG
EST: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG TTTTCCCTGGGTGCTATAAGCTCTEST: gi|124913785|gb|EH987659.1|EH987659
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCT
EST: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG TTTTCCCTGGGTGCTATAAGCTCTGA
genomic: TTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaa ... tcttttatagTTTTCCCTGGGTGCTATAAGCTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAGgtaagcgtaagaaagctgatcactcttcgtaaattggtttattctgaaactaatttggaaatctccatcttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT