1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgctaatgtttgcaaaatctcttagataactaactagtagttaacacttacggttatagcacagtaccatgtgtaaggtttctgcggggtctgg...
species | Arabidopsis thaliana |
transcript | AT1G06390.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037629|gb|DR333384.1|DR333384
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037635|gb|DR333390.1|DR333390
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGAGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATEST: gi|164236824|gb|ES029729.1|ES029729
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATG-GCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGAT
EST: GGAGGC-AAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037634|gb|DR333389.1|DR333389
genomic: GGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037637|gb|DR333392.1|DR333392
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037633|gb|DR333388.1|DR333388
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037631|gb|DR333386.1|DR333386
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTACTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|125319968|gb|EL334053.1|EL334053
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: CTACTATTGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|164158891|gb|ES004122.1|ES004122
genomic: CTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: AGGC-AAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037632|gb|DR333387.1|DR333387
genomic: AGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037630|gb|DR333385.1|DR333385
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037641|gb|DR333396.1|DR333396
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTEST: gi|86037636|gb|DR333391.1|DR333391
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
EST: GTCATATCATTTCCACTACTATAGGAGGCAAAAACGGCGAACCAAAGCAG ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
genomic: GTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgct ... tcccctacagACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCAAAGCAGgtttgatgctaatgtttgcaaaatctcttagataactaactagtagttaacacttacggttatagcacagtaccatgtgtaaggtttctgcggggtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG