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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGCTAAGAGCTATTATGTTCAAGTCGACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGCAAACAATGTCCAAGACGAAGCACTCTCGGTgtaagctttttgttttgtgtctcatttacgtttgcctttcgttgctccaactcaatgggtgaggttttgtttctctatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G05840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G29040.1 (Glycine max), 5'ss of exon 2
ACCTGCTAAGAGCTATTATGTTCAAGTCGACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGCAAACAATGTCCAAGACGAAGCACTCTCGGTgtaagctttttg---ttttgtgtctcatttacgtttgc--ctttcgttgc---tccaactcaatgggtgaggttt------tgtttctctatgcag----
 ||| | ||||  || ||| | ||||| ||||| || ||||||||||||||||| || ||||| ||||||||| | || || |   |||| |  || |||||| |||| |     ||||| || |    ||| ||| |  | |||||  |     ||| |   | | | ||||||      ||||| | | ||       
TCCTCCGAAGAATTACTATTTACAAGTGGACACTGGCAGTGATATTATGTGGGTAAATTGCATTCAGTGCAAAGAGTGCCCCACCAGAAGTAGCCTTGGTgtatgcttctcatccttttgagtttagactacctttactaccttcgtcacctgctcaatttgcttgcttaggtttattttgtgtttttttgtgtgagcat

upper sequence: AT1G05840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0062g01370.t01 (Vitis vinifera), 5'ss of exon 2
ACCTGCTAAGAGCTATTATGTTCAAGTCGACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGCAAACAATGTCCAAGACGAAGCACTCTCGGTgtaagctttttgttttgtgtctcatttac-----gtttgcctttc----gttgctccaactcaatgggtgaggttttgtttc-----tctatgcag--------------------------------------------
||| || | |  ||| ||||| ||||| || ||||| ||||| |||||||||||||| || || ||||||||  ||||||| |    |||| |||| |||||| |||| |  | |||        ||       |||||  |||     ||||       |  ||     |  ||||  |||     | |  |||                                             
ACCGGCAAGGGACTACTATGTACAAGTAGATACAGGAAGTGACATTATGTGGGTTAATTGTATTCAGTGCAATGAATGTCCCAAGAAAAGCTCTCTTGGTgtaggcttctcatcttgctctatgcttgttacttgtttgatttttctgtgttgtattccttgcattaacaaaattttccttcaaatattttagcattgattttttgcattttgttttttttctttgttttcttctaacag