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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGCTTCGGTATATCAAGGAAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacattatgctttttgtagcattagatatttacaagtatctatgctttcgagagagtgatttggccttatgttcttgaaatgaatgatag

Basic information

species Arabidopsis thaliana
transcript AT1G04555.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116459938|gb|EG502530.1|EG502530
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459934|gb|EG502526.1|EG502526
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAGCAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421597|gb|EG464189.1|EG464189
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421602|gb|EG464194.1|EG464194
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421585|gb|EG464177.1|EG464177
EST:     CTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: CTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421584|gb|EG464176.1|EG464176
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459880|gb|EG502472.1|EG502472
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421592|gb|EG464184.1|EG464184
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421596|gb|EG464188.1|EG464188
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCCTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421598|gb|EG464190.1|EG464190
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459887|gb|EG502479.1|EG502479
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459944|gb|EG502536.1|EG502536
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459925|gb|EG502517.1|EG502517
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421595|gb|EG464187.1|EG464187
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCCTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459945|gb|EG502537.1|EG502537
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116476359|gb|EG518951.1|EG518951
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116476347|gb|EG518939.1|EG518939
EST:     AAGCCAAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421594|gb|EG464186.1|EG464186
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421588|gb|EG464180.1|EG464180
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459940|gb|EG502532.1|EG502532
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459914|gb|EG502506.1|EG502506
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459935|gb|EG502527.1|EG502527
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAGCAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459943|gb|EG502535.1|EG502535
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421601|gb|EG464193.1|EG464193
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459888|gb|EG502480.1|EG502480
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATTTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116421591|gb|EG464183.1|EG464183
EST:     TTAGGCTCAAGAGGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: TTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
EST: gi|116459889|gb|EG502481.1|EG502481
EST:     AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGA                         GTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG
genomic: AAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacat ... tgaatgatagGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCAGCTTCGGTATATCAAGGAAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAgtaagcacattatgctttttgtagcattagatatttacaagtatctatgctttcgagagagtgatttggccttatgttcttgaaatgaatgatag

- - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA