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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGACCTCACTTTAATCAAAACCCACAACACGATTTCAGCGATCTTGGATTGTATCCGCGTTACCGGTGCTACAAAAGTCGTCTTTAACCACCTCTATGgtatatactctttcatctcttattcaaaggatatatattcttattaagttagtgtagtctaagtgcaactgaggttgatgcgatcacgtttttctttgttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G04400.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116456640|gb|EG499232.1|EG499232
EST:     CCGGTGCTACAAAAGTCGTCTTTAACCACCTCTATG                         ATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAAC
genomic: CCGGTGCTACAAAAGTCGTCTTTAACCACCTCTATGgtatatactc ... tttgttgtagATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAAC
EST: gi|86057519|gb|DR353276.1|DR353276
EST:     TTGTATCCGCGTTACCGGTGCTACAAAAGTCGTCTTTAACCACCTCTATG                         ATCCTGTTTCGTTAGTTCGGGACCATACCGTNNNGGAGAAGCTGGTGGAAC
genomic: TTGTATCCGCGTTACCGGTGCTACAAAAGTCGTCTTTAACCACCTCTATGgtatatactc ... tttgttgtagATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAAC