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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaatcaccctatacgatgtgaaattctcaaaaaaagatatcgaaaacgtcctgaggtttatactctgtttcgttgcaggaacag

Basic information

species Arabidopsis thaliana
transcript AT1G03630.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86030065|gb|DR325818.1|DR325818
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030096|gb|DR325849.1|DR325849
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030089|gb|DR325842.1|DR325842
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030088|gb|DR325841.1|DR325841
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         AGAAGACAGAAACCGCGATTTTCCACCGGTATTCGTGCACAGACAGTTACA
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacagAGAAGACAGAAACCGCGATTTTCCACCGGTATTCGTGCACAGACAGTTACA
EST: gi|86030090|gb|DR325843.1|DR325843
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030098|gb|DR325851.1|DR325851
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|86030098|gb|DR325851.1|DR325851
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|47830480|gb|CK120164.1|CK120164
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030100|gb|DR325853.1|DR325853
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030077|gb|DR325830.1|DR325830
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|47831169|gb|CK120853.1|CK120853
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         AGAAGACAGAAACCGCGATTTTCCACCGGTATTCGTGCACAGACAGTTACA
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacagAGAAGACAGAAACCGCGATTTTCCACCGGTATTCGTGCACAGACAGTTACA
EST: gi|86030075|gb|DR325828.1|DR325828
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030071|gb|DR325824.1|DR325824
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|86030071|gb|DR325824.1|DR325824
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|86030091|gb|DR325844.1|DR325844
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030107|gb|DR325860.1|DR325860
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030074|gb|DR325827.1|DR325827
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030074|gb|DR325827.1|DR325827
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030074|gb|DR325827.1|DR325827
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030074|gb|DR325827.1|DR325827
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030074|gb|DR325827.1|DR325827
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030074|gb|DR325827.1|DR325827
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030070|gb|DR325823.1|DR325823
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030072|gb|DR325825.1|DR325825
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030082|gb|DR325835.1|DR325835
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030079|gb|DR325832.1|DR325832
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030079|gb|DR325832.1|DR325832
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030079|gb|DR325832.1|DR325832
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030079|gb|DR325832.1|DR325832
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030079|gb|DR325832.1|DR325832
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030079|gb|DR325832.1|DR325832
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030097|gb|DR325850.1|DR325850
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030073|gb|DR325826.1|DR325826
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030104|gb|DR325857.1|DR325857
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030084|gb|DR325837.1|DR325837
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|86030084|gb|DR325837.1|DR325837
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|86030076|gb|DR325829.1|DR325829
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030080|gb|DR325833.1|DR325833
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030102|gb|DR325855.1|DR325855
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030102|gb|DR325855.1|DR325855
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030102|gb|DR325855.1|DR325855
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030102|gb|DR325855.1|DR325855
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030102|gb|DR325855.1|DR325855
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030102|gb|DR325855.1|DR325855
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGG                         A
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAA-Ggtaaagtcaa ... gcaggaacag-
EST: gi|86030106|gb|DR325859.1|DR325859
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg
EST: gi|86030085|gb|DR325838.1|DR325838
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|86030085|gb|DR325838.1|DR325838
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAG                         G
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaa ... gcaggaacag-
EST: gi|86030101|gb|DR325854.1|DR325854
EST:     TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGGAACAG                    
genomic: TTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATC-----A-AGgtaaagtcaa ... gcagg

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAAATTCAATGCTTCTCTAAAGGAGACGACTTTTACTGGTTCTTCATTTTCAAACCATCTTAGAGCTGAAAAGATATCCACCCTGTTGACCATCAAGgtaaagtcaatcaccctatacgatgtgaaattctcaaaaaaagatatcgaaaacgtcctgaggtttatactctgtttcgttgcaggaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA