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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCACCGGAACCTTATGATCGTGGTGCAACCGTTGATATCCCTTTGGATTCTGGCAATgtacgatattttcaataccttctgcattttgcctttcatgtttactcaaaatctggttagatgaaaacggaagttttcattttgctgattctgttcgcag

Basic information

species Arabidopsis thaliana
transcript AT1G03550.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035258|gb|DR331011.1|DR331011
EST:     AACCTTATGATCGTGGTGCAA-CGTTGATATCCCTTTGGATTCTGGCAAT                         GATCTTCGAGCTAAAGAGATGGAACTCCAGGCCAAGGAGAACGAATTGAAG
genomic: AACCTTATGATCGTGGTGCAACCGTTGATATCCCTTTGGATTCTGGCAATgtacgatatt ... ctgttcgcagGATCTTCGAGCTAAAGAGATGGAACTCCAGGCCAAGGAGAACGAATTGAAG
EST: gi|86035256|gb|DR331009.1|DR331009
EST:     AACCTTATGATCGTGGTGCAAC-GTTGATATCCCTTTGGATTCTGGCAAT                         GATCTTCGAGCTAAAGAGATGGAACTCCAGGCCAAGGAGAACGAATTG
genomic: AACCTTATGATCGTGGTGCAACCGTTGATATCCCTTTGGATTCTGGCAATgtacgatatt ... ctgttcgcagGATCTTCGAGCTAAAGAGATGGAACTCCAGGCCAAGGAGAACGAATTG