1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACAGCCAGCTCCACCAATGCCGCATCAACAGTCTACTATTCGGCCTAGAGTTAGGGCTAGGCGAGGTCAAGCTACCGATCCACATAGCATCGCTGAGAGGgtaagatgtttgatacactttttttatcttctggtctcttttttcgatttttatgtgataatgtttgatcaaagctttaattatagcttttggttgagaaagttcgattagttcttacttactaagaacggtaagacctaacctgaatgtatttgctttgcaacag
species | Arabidopsis thaliana |
transcript | AT1G03040.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCATCGCTGAGAGG CTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTAEST: gi|164178922|gb|ES028987.1|ES028987
genomic: AGCATCGCTGAGAGGgtaagatgtt ... tttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTA
EST: GCATCGCTGAGAGG CTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGEST: gi|116436445|gb|EG479037.1|EG479037
genomic: GCATCGCTGAGAGGgtaagatgtt ... tttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTG
EST: AGCATCGCTGAGAGG CTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTA
genomic: AGCATCGCTGAGAGGgtaagatgtt ... tttgcaacagCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGCCAGCTCCACCAATGCCGCATCAACAGTCTACTATTCGGCCTAGAGTTAGGGCTAGGCGAGGTCAAGCTACCGATCCACATAGCATCGCTGAGAGGgtaagatgtttgatacactttttttatcttctggtctcttttttcgatttttatgtgataatgtttgatcaaagctttaattatagcttttggttgagaaagttcgattagttcttacttactaagaacggtaagacctaacctgaatgtatttgctttgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG