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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTAAAGTTGAATTTAAAGACAATGAATGGAAATATTTTGTGCATTACATTgtaagtagatactgtatatgtttaaaatcattcttttgagctattttgcttctatctttagttttgaagatgtaaatgatttcttttggcag

Basic information

species Arabidopsis thaliana
transcript AT1G02740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02740.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g09710.t01 (Vitis vinifera), 5'ss of exon 2
GTTCTTAAAGTTGAATTTAAAGACAATGAATGGAAATATTTTGTGCATTACATTgtaagtagatactgtatatgtttaaaatcattc-ttttg-agctatttt-gcttctatctttagttttgaagatgtaaatgatttcttttggcag-------------------------------------------------------------------
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GTGCGAAGAATTGAATTTCAGATGAATGAATGGAAGTATTTTGTTCATTACCTTgtaagtattttacacacacacatcggttttttcattctgcaatgattttagctcttacctccattagtgtggttgcat-tagttccaagttgctgagtttgtgagcaaataggattttcctattttggtattttgataacatataatatattttttcctcag