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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatcttaatccacccaattttctgttttgttttcgtctcttttagattgcctaagcgttgatgatcaacttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G02305.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038008|gb|DR333763.1|DR333763
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037983|gb|DR333738.1|DR333738
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037996|gb|DR333751.1|DR333751
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAATGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038014|gb|DR333769.1|DR333769
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037985|gb|DR333740.1|DR333740
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|124866249|gb|EH950686.1|EH950686
EST:     AAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: AAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037980|gb|DR333735.1|DR333735
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038020|gb|DR333775.1|DR333775
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038002|gb|DR333757.1|DR333757
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037992|gb|DR333747.1|DR333747
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038004|gb|DR333759.1|DR333759
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|116429058|gb|EG471650.1|EG471650
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038015|gb|DR333770.1|DR333770
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037994|gb|DR333749.1|DR333749
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037990|gb|DR333745.1|DR333745
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038001|gb|DR333756.1|DR333756
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038019|gb|DR333774.1|DR333774
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037989|gb|DR333744.1|DR333744
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037997|gb|DR333752.1|DR333752
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037987|gb|DR333742.1|DR333742
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAATGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037986|gb|DR333741.1|DR333741
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037984|gb|DR333739.1|DR333739
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037998|gb|DR333753.1|DR333753
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|164173748|gb|ES133563.1|ES133563
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAAT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAAT
EST: gi|125092259|gb|EL150082.1|EL150082
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAA
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAA
EST: gi|86038000|gb|DR333755.1|DR333755
EST:     YYGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038013|gb|DR333768.1|DR333768
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|164042028|gb|ES155278.1|ES155278
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGT
EST: gi|86038011|gb|DR333766.1|DR333766
EST:     TTGCAGCTGAAAATSTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037991|gb|DR333746.1|DR333746
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038017|gb|DR333772.1|DR333772
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038021|gb|DR333776.1|DR333776
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86037988|gb|DR333743.1|DR333743
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
EST: gi|86038010|gb|DR333765.1|DR333765
EST:     TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG                         AATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT
genomic: TTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatct ... acttttgcagAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGATGGAAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGgttttgatcttaatccacccaattttctgttttgttttcgtctcttttagattgcctaagcgttgatgatcaacttttgcag

- - - GCAGCT
- - -  CAGCTG
- - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - CATGGA