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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtccctcaaccgcttctaaaagggatgttgcttacctctctcgttatatttaacatacatccatttttttttttaattgaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G02170.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtccctcaaccgcttctaaaagggatgttgcttacctctctcgttatatttaacatacatccatttttttttttaattgaaacag--------------
||||  | ||| |||| ||||| |  ||||| ||| || | || ||||| ||||||||||| || ||||| ||||| || || || ||||||||||||||||||       || ||     |||   |  | |  ||| |   |   |   | |||  |   |   ||  ||   ||||   ||||  |  |              
TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttacc---ttctaaagatagtctgttatagtttctgcatggtt---taactttatggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc

upper sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G45470.1 (Glycine max), 5'ss of exon 2
TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtccctcaaccgcttctaaaagggatgttgcttacctct-ctcgttatatttaacatacatccatttttttttt-taattgaaacag---------
||||  | ||| |||| ||||| |  ||||| ||| || | || ||||| ||||||||||| || ||||| ||||| || || || ||||||||||||||||||       || ||     |||   |  | |  ||| |   |   ||   |  ||||    |   |  | |||     | | || |  |  |         
TTGTTAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttacc---ttctaaagaaagtctgttatagtttctgcatggtttaacttcctgaattttggctctgttgactttagcaatgtgatggccaatgaaaaattct

upper sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 4
TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtccctcaaccgcttctaaaagggatgttgcttacctctctcgttatat--ttaacatacatccatttttttttttaattgaaacag---------
||||  | |||||||| ||||| || ||||| ||| |||| || ||||| ||||||||||| ||| || |||||||||| ||||| |||||||||| ||||||| |  | | |  |||  |  |  ||    |  |  ||   | | |  |||  |  | |  | | |    | | |   |  |  |  |||           
TTGTCAGACCTCTTCCTCATGGGGTTAAGCTTCATGCAATAATAGATGCCTGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagt--ttcatgtacccttgttttaaaatctaatatttgttt-tattattacttggtgagtaaagaattgtatatggatgcacctagaacctgcatgatat

upper sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0013g00220.t01 (Vitis vinifera), 5'ss of exon 2
TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgtta------ttagtccctc--aac--cgcttct----aaaagggatgt--tgcttacctctctcgttatatttaacatacatccatttttttttttaattgaaacag-------------------------------------------------------------------------------------
||||  | |||||||| ||||| || ||||| ||| |||| || ||||| ||||||||||| || ||  | |||||||| ||||| || ||||||||||||| |      || ||   ||  |||  | |||||     ||    ||||  |   |          | | |   ||   | | ||||   || | |  ||  |  |                                                                                       
TTGTTAGGCCTCTTCCTCATGGAGTTAAGCTTCATGCAATCATTGATGCATGCCATAGTGGCACTGTGTTAGATTTACCATTCCTCTGTAGAATGAACAGgtcagttgttttggtatttccaaacaacacttctttgtgaataccatgtgataagtggagagagtataaaaagaaatgaaaaaccataaattctgtctatatatgctaactttttaataggattcaattccaattttcccttgtccatttttttagtccaccctgcttatagatgtttcctttgtggccatag

upper sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0013g00210.t01 (Vitis vinifera), 5'ss of exon 2
TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtccctcaaccgcttctaaaagggatgttgcttacctctctcgttatatttaacatacatccatttttt-tttttaattgaaacag------------
||||  | |||||||| | ||| |||||||| ||| ||||  | ||||| |||||||||||||| ||  | ||| |||| ||||| || |||||||||||||   |||||| |       |  ||      |   |   ||    | || || | |  || |     | ||||||| |||||||  || |               
TTGTTAGGCCTCTTCCTCCTGGAGTCAAGCTTCATGCAATCGTTGATGCATGCCATAGTGGTACTGTGTTAGATCTACCATTCCTTTGTAGAATGAACAGgt---tagtccattggtt-ttcgtatttttcaaactatatattcgtatc-ttgtttggaataacttcctattttttatttttaaaggagaatatcgatattatga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125307199|gb|EL321284.1|EL321284
EST:     CTGGATTTACCCTTCCTATGCAGAATGAACAG                         AGCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAA
genomic: CTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtc ... attgaaacagAGCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAA
EST: gi|164080366|gb|ES075318.1|ES075318
EST:     GTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAG                         AGCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAA
genomic: GTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtc ... attgaaacagAGCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAA
EST: gi|164121352|gb|ES089344.1|ES089344
EST:     GTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAG                         AGCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAA
genomic: GTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtc ... attgaaacagAGCTGGGCAGTATGTGTGGGAGGATCATCGGCCTAGGTCAGGTTTGTGGAA