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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag

Basic information

species Arabidopsis thaliana
transcript AT1G01960.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g14260.1 (Oryza sativa), 5'ss of exon 2
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactag--tgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag
| ||||| ||| |||| || ||||| | |||||| || || |||||||| || ||  |||| |||||||| |||||  ||||||| || ||||||||||||||   | |||||   |  | ||   |||  | |    ||   | ||    |      | |   || ||   | || | | |||  ||| ||| |   ||  | |  || || |   | ||||  | |                
TTCTTCGTTTCCTGGAAAAACTCTGTGCTGATTCTCAAATCTTGGTAGACATTTTTCTCAATTATGATTGTGATGTACACTCATCAAACATATTTGAGAGgtaatttataatactgtaat-tgagctatagtgagcttctt--tttaaaggtccccccgaa--ggacctataa-cactcattaggatgctaacca---gatattgtgtt-atcttaattttggactacag--------------

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G058870_T01 (Zea mays), 5'ss of exon 2
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag
| ||||| || ||||| |||||||| | |||||| || ||  | || ||||| ||| | || |||||||| |||||| ||||||| || ||||||||||||||   |  |  ||   ||| |  ||||    |  |         || |||| || |  |||      || |||  || ||| |       | ||| ||  |  |                                     
TTCTTCGTTTTTTGGAAAAGCTCTGTGGTGATTCTCAAATCCTAGTTGATATTTTCCTTAATTATGATTGTGATGTCCACTCATCAAACATATTTGAGAGgtac--tggagcattcagtttt--cttagtgctctggttcagcattagttatatt-tactattctttttgtgatattttacttga------tgttttaaccaatag------------------------------------

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 2
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag
||||||| ||  |||| ||||| || |||||||||||||| ||||| || || || ||||||||||| || |||||||| ||||| |||||||||||||||| ||  ||| ||| || ||      ||  |||      | | | |||||  |||   |||| |    |  |  ||                                                                  
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtg--ctattattttatt------taattttttatagttattttatttgatttactgtataaataatatgtgcag-----------------------------------------------------------------

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G02610.1 (Glycine max), 5'ss of exon 2
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag
||||||| ||  |||| ||||| || |||||||||||||| ||||| || || || ||||||||||| || |||||||| ||||| |||||||||||||||| ||  ||| ||| || ||     || | | ||       | | |||||  |||   |||| |    |  |  || |  |  ||    | |||  ||  |    || |                                 
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtg--ctattattttatttaa--ttgtttatagat----attttatttgatttactgtataaataatatgtgcaatttcatgtttagaatatg-gatctcaagttta---------------------------------

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G45340.1 (Glycine max), 5'ss of exon 2
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag
||||||| ||  |||| ||||| || |||||||||||||| ||||| || || || ||||||||||| || |||||||| ||||| |||||||||||||||| ||  ||| ||| || ||      ||  |||      |   | |||||  |||   |||| |    |  |  || |  |  ||    | |||  ||  |    || |                                 
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtg--ctattattttatt------taattttttatagttgttttatttgatttactgtataaataatatgtgcagtttcatgtttagaatatg-gatcttaagttta---------------------------------

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G40480.1 (Glycine max), 5'ss of exon 2
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag
||||||| ||  |  | ||||| || | |||||||||||| |||||||| || || ||||||||||| || |||||||| ||| | || ||||||||||||| || |   || | ||||| |   |  | ||  | |  |||||  |||| |||| |  ||           ||   ||| |  |       || || |    |||||     | ||||                       
TGCTTCGTTTTCTACAGAAGCTTTGTGATGATTCACAGATATTGGTAGACATTTTTATCAACTATGACTGTGATGTCAATTCAACAAACATATTTGAGAGgtttgct---atgttttgttttatttggtatt--ctctatgaata-atttgttttattttac----------atttataatttata------atatggatccccattccccagtttattatc--------------------

upper sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 2
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag
||||||||||  | || || ||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||| ||||| || ||||| ||||||||||        || |||| ||| || | ||   |     ||| | |  ||| |     | ||   || |      |||  | |   |  |  | | |      ||  || |                             
TGCTTCGGTTTCTAGAGAAACTCTGTGTTGATTCACAGATTTTAGTAGACATATTCATCAATTATGATTGTGATGTCAATTCATCAAACATATTCGAGAGgtatg--------tcctgtt-tggttttttttgttgatacaaatat-tcaattatacaaaagca---cttctggttgtaaaaaatttcagttggtggcaaagctctttgttac-----------------------------