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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTCTAGCAGCAAGTGATGTCATTTCGCTACATTGTGCATTAACAAATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGgtatgagttttcttgtcaaatgaaatttgattctccatgaatgtgaattgaagatgaacttctgctttctcgcattcccttcaattctggttgattttatgtattag

Basic information

species Arabidopsis thaliana
transcript AT1G01510.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01510.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g03460.1 (Oryza sativa), 5'ss of exon 1
GATCTTCTAGCAGCAAGTGATGTCATTTCGCTACATTGTGCATTAACAAATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGgtatgagttttctt--gtcaaatgaaatttgattctccatgaat-gtgaatt--gaagatgaacttctgctttctcgcattc--ccttcaattctggt-tgattttatgtattag-------
||| |  | |||||||||||  |  |||| || || ||  ||||||||||||||||| | || ||||| ||||| || ||| |||||||| |||||||||||| |  || ||||    |   |    | |  | ||  ||| ||  |  |||  |||      ||| |  |  ||    |||  || | ||     || | ||||| |   |||        
GATTTGTTGGCAGCAAGTGACCTTGTTTCACTGCACTGCACATTAACAAATGACACGATGCATATACTTAATGCTGACTGTCTGCAGCATGTAAAACCTGgtaaggtttatcttcaacccctttctttcttctgctttatgcattatatattccgaaataatgcttatcatgcctttagttcagccgtaaaacacagtataattttcttgtttatctcacag

upper sequence: AT1G01510.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os10g38900.1 (Oryza sativa), 5'ss of exon 2
GATCTTCTAGCAGCAAGTGATGTCATTTCGCTACATTGTGCATTAACAAATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGgta-------------tgagttttcttgtcaaatgaaatttgattctccatga-----atgtgaattgaag-atgaacttctgctttctcgcattccct-tcaattctggttgattttatgtattag----------
||| |  |  ||||||||||| |  |||| || || ||||| ||||||||||| ||    || ||||||||||| ||| || ||||||| |||||||||||||               ||||| ||| |||  |      |   | | |   |     |||     || || |||||  |||| ||    |  ||| || |  || ||   | |  || ||  || |          
GATTTATTGACAGCAAGTGATCTTGTTTCACTTCACTGTGCGTTAACAAATGATACAACACATATACTCAATGCCGAGCGTCTGCAGCACATAAAACCTGgtaatgtagatcctttccagtttccttttcatgttttccctttcttttcggtattaccatgcttgctgtagtatgaa--tctgtttatctgttttctctgtgcatgctatatcacattctggttttgagccttgcag

upper sequence: AT1G01510.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G476107_T02 (Zea mays), 5'ss of exon 3
GATCTTCTAGCAGCAAGTGATGTCATTTCGCTACATTGTGCATTAACAAATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGgtatgagttttcttgtcaaatgaaatttgattctccatg-aatgtgaattgaag-atgaacttctgctttctcgcattcccttcaa-ttctggttgatt------ttatgtattag-----------------------------
||| |  ||||||| |||||  | |||||||| ||||| | |||||||||||| ||  | || ||||| ||||| || ||  ||||||| |||||||||||||||  |||  ||   || ||   | || | || | || | | |||| |   | |||  ||||   | | |    |     |||  || |  ||||        || | ||| |                              
GATTTATTAGCAGCGAGTGACCTTATTTCGCTGCATTGCGGATTAACAAATGAAACCATGCATATACTTAATGCTGACTGCCTGCAGCACATAAAACCTGgtatgcttttcttttataattgtgttatgttgcttcttgtagtctgaaatagtgcatgtccttcctttattttagttctatatcatcttttttttgaccggaaagttctatatcatcttgtcatcgaatattttgaatcctgcag

upper sequence: AT1G01510.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G418294_T01 (Zea mays), 5'ss of exon 2
GATCTTCTAGCAGCAAGTGATGTCATTTCGCTACATTGTGCATTAACAAATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGgtatga-gttttcttgtcaaatgaaatttgattctccatgaatgtgaattgaagatgaacttctgctttctcgcattcccttcaattctggttgattttatgtattag------------------------------------------------
|||||  |||||||||||||| |  ||||||| ||||||||||| |||||||| ||    || ||||| ||||| ||| |  | ||||| ||||||||||||| || ||  | |  |    |     ||  ||||   | |        |   |     |   |||| ||| |||||    | | || |   |  ||||||||    |                                                
GATCTATTAGCAGCAAGTGATCTAGTTTCGCTTCATTGTGCATTGACAAATGATACAACACATATACTTAATGCTGAGCGCCTTCAGCACATAAAACCTGgtaagacgtgctttacttgcttccttcttttttctgttttagcccctccttttggcagtcgcatgctctct-gcattataattagtttt--ctatttttatgttcatgctataagcctataacacattgttgatgactaccttctgaatgttgcag