Sequence
atgc intronic sequence ATGC exonic sequenceTGGAACAAATATGAATGAAGAAAGCTCAAGATCTCACCTCATATTATCAGTTGTTATTGAAAGTATTGATCTTCAAACCCAGTCTGCTGCGAGGGGCAAGgtgacaaaattcactatgtttttctttattgactcattatcatttttcacaggatttagtagcatttagggattttaaggaaataggagtttctttagat...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G65930.3 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G65930.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 22
TGGAACAAATATGAATGAAGAAAGCTCAAGATCTCACCTCATATTATCAGTTGTTATTGAAAGTATTGATCTTCAAACCCAGTCTGCTGCGAGGGGCAAGgtgacaaaattcactatgtt--tttctttattgactcattatcatttttcacaggatttagtagcatttagggattttaagg-------aaataggagtttctttagat----------------------------------------------------------
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AGGGACACAGATGAATGATGAAAGTTCAAGATCTCATCTCATACTATCAATTGTCATTGAAAGTACTAACCTTCAAAGCCAATCAACTGCAAGGGGAAAGgtattggtgtacattacttcaattttacctttgaat-atcagtatgaatgttaatataccatattcttcctttattttgtggcaatttgaaacacaagtattttatgacctcgaggcattgcagtttttttaacttttttatgctggatttgtcatttgtcatacag
upper sequence: AT5G65930.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 25
TGGAACAAATATGAATGAAGAAAGCTCAAGATCTCACCTCATATTATCAGTTGTTATTGAAAGTATTGATCTTCAAACCCAGTCTGCTGCGAGGGGCAAGgtgacaaaattcactatgtttttctttattgac--tcat-tatcatttttcacaggatttagt---agcatttagggattttaaggaaatag--gagtttctttagat
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AGGAACCCAAATGAATGATGAAAGTTCAAGATCTCATCTCATTCTATCAATTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAGgt----atattttagattttttcctttaacagcaataatatatcctctttta-agaattgggctagaaaaagtagaagacagatggaaagagatgaactttattc---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125159594|gb|EL187604.1|EL187604EST: TGCTGCGAGGGGCAAG CTGAGTTTTGTGGATCTTGCTGGTTCTGAGAGAGTTAAAAAGTCGGGCTCA
genomic: TGCTGCGAGGGGCAAGgtgacaaaat ... ttatttgcagCTGAGTTTTGTGGATCTTGCTGGTTCTGAGAGAGTTAAAAAGTCGGGCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAACAAATATGAATGAAGAAAGCTCAAGATCTCACCTCATATTATCAGTTGTTATTGAAAGTATTGATCTTCAAACCCAGTCTGCTGCGAGGGGCAAGgtgacaaaattcactatgtttttctttattgactcattatcatttttcacaggatttagtagcatttagggattttaaggaaataggagtttctttagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC