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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGTAGTTGACACTAAAATATGTCATCCAACTGAATTCGACTTCTACCTTTGTAGCCATGCGGGTATTCAGgtacgaaacaactatcgaaatatccgttaatatgaccttttccgtaactatacagataaaatgacactgtttgtgtttgttgtatgatctag

Basic information

species Arabidopsis thaliana
transcript AT5G43810.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: EFJ19862 (Selaginella moellendorffii), 5'ss of exon 18
GTACTGTAGTTGACACTAAAATATGTCATCCAACTGAATTCGACTTCTACCTTTGTAGCCATGCGGGTATTCAGgtacgaaacaactatcgaaatatccgttaatatgaccttttccgtaactatacagataaaatgacactgt-ttgtgtttgttgtatgatctag
| ||||| || ||  | || || || |||||||| || || |||||||||||||| |||||||| || |||||||||          ||      | ||       || |||||   ||| || | |  |||  | || ||| | ||                    
GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaa--------catgatggcaccc-------tggccttt---gtagctttgctcatacgacgagactatgttacag----------------

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: EFJ14096 (Selaginella moellendorffii), 5'ss of exon 18
GTACTGTAGTTGACACTAAAATATGTCATCCAACTGAATTCGACTTCTACCTTTGTAGCCATGCGGGTATTCAGgtacgaaacaactatcgaaatatccgttaatatgaccttttccgtaactatacagataaaatgacactgtttgtgtttgttgtatgatctag
| ||||| || ||  | || || || |||||||| || || |||||||||||||| |||||||| || |||||||||      |  |   | |      |    | |  | ||   | || | |   |||| |  | |||                          
GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgta------agttgatggagccctggcctttgtagctttgctcata-cgacg-agattatgttacag-------------------------

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: EFJ14095 (Selaginella moellendorffii), 5'ss of exon 18
GTACTGTAGTTGACACTAAAATATGTCATCCAACTGAATTCGACTTCTACCTTTGTAGCCATGCGGGTATTCAGgtacgaaacaactatcgaaatatccgttaatatgaccttttccgtaactatacagataaaatgacactgtttgtgtttgttgtatgatctag
| ||||| || ||  | || || || |||||||| || || |||||||||||||| |||||||| || |||||||||      |  |   | |      |    | |  | ||   | || | |   |||  |  | |||                          
GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgta------acttgatggagccctggcctttgtagctttgctcata-cgacg-agactatgttacag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164068023|gb|ES138854.1|ES138854
EST:     GCCATGCGGGTATTCAG                         GGAACAAGCAGGCCTGCACATTACCATGTTCTTTGGGACGAGAACAATTTA
genomic: GCCATGCGGGTATTCAGgtacgaaaca ... tatgatctagGGAACAAGCAGGCCTGCACATTACCATGTTCTTTGGGACGAGAACAATTT-
EST: gi|124716615|gb|EH808017.1|EH808017
EST:     ATGCGGGTATTCAG                         GGAACAAGCAGGCCTGCGCATTACCATGTTCTTTGGGACGAGAACAATTTC
genomic: ATGCGGGTATTCAGgtacgaaaca ... tatgatctagGGAACAAGCAGGCCTGCACATTACCATGTTCTTTGGGACGAGAACAATTTC
EST: gi|164006274|gb|ES130508.1|ES130508
EST:     GCCATGCGGGTATTCAG                         GGAACAAGCAGGCCTGCACATTACCATGTTCTTTGGGACGAGAACAATT-C
genomic: GCCATGCGGGTATTCAGgtacgaaaca ... tatgatctagGGAACAAGCAGGCCTGCACATTACCATGTTCTTTGGGACGAGAACAATTTC