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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAAAGAGCATACTTGAAAGTCATGCCAGTTACTTGATGTCTGGTAAAGAACTTTCAAAGCTTGTTGCATTCGTCAAAGGCACCCAGTTTGATATTGTGgtacgtatacaatttgtacctttcaccttttcatgcttggaaccaatacggtatatatattgattcactaacaataccaaaattccag

Basic information

species Arabidopsis thaliana
transcript AT5G28350.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28350.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os02g54500.1 (Oryza sativa), 5'ss of exon 18
TGTAAAGAGCATACTTGAAAGTCATGCCAGTTACTTGATGTCTGGTAAAGAACTTTCAAAGCTTGTTGCATTCGTCAAAGGCACCCAGTTTGATATTGTGgtacgtatacaatttgtacctttcaccttttcatgcttggaaccaatacggtatatatattgattcactaacaataccaaaattccag
||| | ||  || || || |  ||||| || || ||||||||||| || || ||||| ||||| ||||| || || ||||| || ||||||||| |||||||| |  |   | |  |     |||            | || |||| ||   || | |||| ||  | | | ||    |    | |||
TGTCATGAATATTCTGGAGAACCATGCTAGCTATTTGATGTCTGGCAAGGAGCTTTCTAAGCTGGTTGCTTTTGTGAAAGGAACTCAGTTTGATCTTGTGgtaagattttcactgttcatcatcattaccagtcttgttgatccaaaaccacatgt-tattaatatatttataacttta----tgcag

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA09G39270.2 (Glycine max), 5'ss of exon 19
TGTAAAGAGCATACTTGAAAGTCATGCCAGTTACTTGATGTCTGGTAAAGAACTTTCAAAGCTTGTTGCATTCGTCAAAGGCACCCAGTTTGATATTGTGgtacgtatacaatttgtacctttcaccttttcatgcttggaaccaatacggtatatatattgattcactaacaataccaaaattccag
||| ||||  ||  | ||||  ||||| |||||| |||||||||| ||||| || || |||||||||||||| || ||||| || ||||||||| | ||||||| ||| | | |    ||| | |  |  |  |  ||  |     | | || | || |||| |||| | |||  |     |||  ||
TGTTAAGAATATTTTAGAAAACCATGCTAGTTACCTGATGTCTGGGAAAGAGCTCTCCAAGCTTGTTGCATTTGTAAAAGGAACTCAGTTTGATTTAGTGgtacttattctaatc---cctgtaagataattttctttttagtt--ttcagtgtttaaattg-ttcaatgacacca-----attgtag

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA18G47050.1 (Glycine max), 5'ss of exon 19
TGTAAAGAGCATACTTGAAAGTCATGCCAGTTACTTGATGTCTGGTAAAGAACTTTCAAAGCTTGTTGCATTCGTCAAAGGCACCCAGTTTGATATTGTGgtacgtatacaatttgtacctttcaccttttcatgcttggaaccaatacggtatatatattgattcactaacaataccaaaattccag------
||| ||||  ||  | ||||  ||||| |||||| |||||||||| ||||| || || |||||||||||||| || ||||| || ||||||||| | |||||| | ||     |  |    ||   ||  ||    |  ||     | |  | ||  | |   |     ||   | | |  |  |||       
TGTTAAGAATATTTTAGAAAACCATGCTAGTTACCTGATGTCTGGGAAAGAGCTCTCCAAGCTTGTTGCATTTGTAAAAGGAACTCAGTTTGATTTAGTGgtaag-atcttgctgattgacttattctaatcgctgtaagataattttctttttagttttcagtgtttaaattgttcgatgacaccaattgtag

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 5'ss of exon 19
TGTAAAGAGCATACTTGAAAGTCATGCCAGTTACTTGATGTCTGGTAAAGAACTTTCAAAGCTTGTTGCATTCGTCAAAGGCACCCAGTTTGATATTGTGgtacgtatacaatttgtacctttcaccttttcatgcttggaaccaatacggtatatatattgattcactaacaataccaaaattccag
||| || | ||| || ||||  ||||| |  || |||||||| || ||||||||||| || ||||||||||| || |||||||| ||||||||| | |||||| | | ||       |  |||    ||   |   || | | ||  |  |  |   |  | | |   | || |       ||| |||
TGTCAAAAACATCCTAGAAAACCATGCTAACTATTTGATGTCAGGAAAAGAACTTTCCAAACTTGTTGCATTTGTTAAAGGCACTCAGTTTGATCTAGTGgtaagaaaac----ctcatttttggttttaggactattagtatcatcagtggttgctt-ctaacttgttcaccacctacttattacag