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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACATATTTAAGTTGGCGCAAGGAGAATATATAGCACCAGAGAAGATCGAAAATGTTTATACCAAATGTAGATTCGTTTCGCAGTGTTTCATTCACGgtaagcaaagactctactcacactatacatggcttcttcttcacttgtgctatttctcaaccgagccagaatgtctctattatag

Basic information

species Arabidopsis thaliana
transcript AT5G27600.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27600.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 10
AAGAACATATTTAAGTTGGCGCAAGGAGAATATATAGCACCAGAGAAGATCGAAAATGTTTATACCAAATGTAGATTCGTTTCGCAGTGTTTCATTCACGgtaa--gcaaagactctactcacactatacatggcttcttcttcacttgtgctatttctcaaccgagccagaatgtctctattatag
|||||||| || ||||| || ||||||||||| ||||| ||||||||||| |||||||| ||| ||||||| |  ||| || | || ||||| ||  | |||||     | || |||       |||||     | ||   |        ||   |||| || |         ||| ||  ||  ||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAAAATGTCTATGCCAAATGCAAGTTCATTGCCCAATGTTTTATATATGgtaatatttatgattctgtgttggctatatg-accatcagttatggccaagcatgttctaaatctct------tgtttcggttgcag

upper sequence: AT5G27600.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GRMZM2G059381_T01 (Zea mays), 5'ss of exon 19
AAGAACATATTTAAGTTGGCGCAAGGAGAATATATAGCACCAGAGAAGATCGAAAATGTTTATACCAAATGTAGATTCGTTTCGCAGTGTTTCATTCACGgtaa--gcaaagactctactcacactatacatggcttcttcttcacttgtgctatttctcaaccgagc-cagaatgtctctattatag
|||||||| || ||||| || ||||||||||| ||||| ||||||||||| || ||||| ||| | || || |  ||| || | || || || ||  | |||||     | |  |  |      ||  |     |||| | | ||  | |    ||  | | | |    |||                
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAGAATGTCTATGCTAAGTGCAAGTTCATTGCTCAATGCTTTATATATGgtaatattcatgctttcatctgagctgaaagcaccttcgtgtacatct-taaggttgttgatctggatgcag----------------