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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAATCGACCTTGACAGCTTACCGAGTCTGAAAGAGAAGAGAGATATGTTTTTCCTTCTCTCTTTCTTAGTTCACAACACAAAACCTGTGGGCCACCAGgtacgaacccaatcaaaatctttatggtatgaatgtattcttaaatgttgtgacgttcaacttttctagaattttaatgtctcttccctctgttatcgtctttggtattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G11700.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G11700.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 20
GATAATCGACCTTGACAGCTTACCGAGTCTGAAAGAGAAGAGAGATATGTTTTTCCTTCTCTCTTTCTTAGTTCACAACACAAAACCTGTGGGCCACCAGgtacgaacccaatcaa-aatctttatggtatgaatgtattcttaaatg-ttgtgacgttcaacttttctagaattttaatgtctcttccctctgttatcgtctttggtattgcag
        |  |  |||  || | ||  ||  | |||||||||||||| ||||  |||||||||||  || |||| || ||||||||||| || || ||||||        ||  | | | | ||  |  | |||  |  |  || || |||   | ||  |    |     ||||   | | | |||  |   ||   || ||   |   |   
--------ATGTAAACAATTTGCAGATGCTTGACGAGAAGAGAGATATCTTTTATCTTCTCTCTTTTATACTTCAGAATACAAAACCTGTTGGGCATCAGgtatctcttgtattgatagtttctactgatttaataga--caaaattgcttgcatcatttgataact----gatttctttattttttcttttcctttatgtgttgcctgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124993406|gb|EL065675.1|EL065675
EST:     TTTTCCTTCTCTCTTTCTTAGTTCACAACACAAAACCTGTGGGCCACCAG                         GATATGGTTGGCTTAGTTATCTCGATGTTACTTTTAGGAGATT
genomic: TTTTCCTTCTCTCTTTCTTAGTTCACAACACAAAACCTGTGGGCCACCAGgtacgaaccc ... ggtattgcagGATATGGTTGGCTTAGTTATCTCGATGTTACTTTTAGGAGATT