1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GCATATTCCGTTGGGAGAGCTTTGACTCAGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAGgtatatatctgcatttccaagcatttgcaaacaattggctagagagttctcttccaaataacttacatttctacgaatgcttgaagatttgaatcttaca...
species | Arabidopsis thaliana |
transcript | AT5G08650.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAG GCTTGTATAGGATCCAAGGTGATTGCTAEST: gi|124783280|gb|EH873140.1|EH873140
genomic: AGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAGgtatatatct ... atacttgcagGCTTGTATAGGATCCAAGGTGATTGCTA
EST: TGCCCATCCAG GCTTGTATAGGATCCAAGGTGATTGCTAGTGAAGCACTCTCAGCAATCAEST: gi|125243955|gb|EL258040.1|EL258040
genomic: TGCCCATCCAGgtatatatct ... atacttgcagGCTTGTATAGGATCCAAGGTGATTGCTAGTGAAGCACTCTCAGCAATCA
EST: AGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAG GCTTGTATAGGATCCAAGGTGATTGCTAGTGAAG
genomic: AGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAGgtatatatct ... atacttgcagGCTTGTATAGGATCCAAGGTGATTGCTAGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATTCCGTTGGGAGAGCTTTGACTCAGAAACTCAAAGAGCTTATTCCACGACAAATGTTTAAAGTGCCCATCCAGgtatatatctgcatttccaagcatttgcaaacaattggctagagagttctcttccaaataacttacatttctacgaatgcttgaagatttgaatcttaca
- - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaataa