Sequence
atgc intronic sequence ATGC exonic sequenceGGAGGAAATGCATTTACTAGATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGACCCTAAGGAAAAACAAACTGCCTTTGAGATTGGCCAAgtaatatgcctcatcagttttgcttctcagcatagtgattcctccttcttttctctcttgtttgctcattgtacagttttgcgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G57410.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 17
GGAGGAAATGCATTTACTAGATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGACCCTAAGGAAAAACAAACTGCCTTTGAGATTGGCCAAgtaatatgcctcatcagttttgcttctcagcatagtgattcctccttcttttctctcttgtttgctcattgtacagttttgcgcag
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AGAGGATATCCTGATCCTTGACACACACGCAGAAGTGTTTGTATGGATTGGTCAGTGTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGgtaaacatgctcaacaaattagagcct--------tcatttcccttatttccttttacttgatgtacaatagaaattttctctcag
upper sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 17
GGAGGAAATGCATTTACTAGATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGACCCTAAGGAAAAACAAACTGCCTTTGAGATTGGCCAAgtaatatgcctcatcagttttgcttctcagcatagtgattcctccttcttttctctcttgtttgctcattgtacagttttgcgcag
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TGAGGATATCTTGATACTTGATACACATGCTGAAGTTTTTGTTTGGGTTGGTCAGACTGTAGATCCCAAGGAAAAGCAGAGTGCTTTTGAAATCGGTCAGgtact-tgcttaagcagcttatgccctttcaatatt-actcttcaataatgtatct--tattcatt--atggaagctcttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124948897|gb|EL024593.1|EL024593EST: GTCAATGTGTGGACCCTAAGGAAAAACAAACTACCTTTGAGATTGGCCAA AGATACATAAATCTGG
genomic: GTCAATGTGTGGACCCTAAGGAAAAACAAACTGCCTTTGAGATTGGCCAAgtaatatgcc ... ttttgcgcagAGATACATAAATCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGGAAATGCATTTACTAGATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGACCCTAAGGAAAAACAAACTGCCTTTGAGATTGGCCAAgtaatatgcctcatcagttttgcttctcagcatagtgattcctccttcttttctctcttgtttgctcattgtacagttttgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA