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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTCAACTCTTCTTGCAAAATCACTCTATCAAAAGCTCTGGGACGACAGTCCATATTTGCTGAAACAATTGCCTGGCATTGGAATGGTTACAGCTAAGgtttaatctctgtttaagctcgttctctgcaccttaccttttccagatgattcagtggtttttgtttcttggtaccttttgcctgaatacattcttttcctag

Basic information

species Arabidopsis thaliana
transcript AT3G27730.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27730.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os02g40450.1 (Oryza sativa), 5'ss of exon 20
TAGCTCAACTCTTCTTGCAAAATCACTCTATCAAAAGCTCTGGGACGACAGTCCATATTTGCTGAAACAATTGCCTGGCATTGGAATGGTTACAGCTAAGgtttaatctctgtttaagctcgttctctgcaccttaccttttccagatgattcagtggtttttgtttcttggtaccttttgcctgaatacattcttttcctag
 || || |  || ||||| ||||   |  | ||||| || |||||    ||||||| ||||||||| ||||||||||| |||||||| || ||||| |||||| | |  || | | | ||  |  |  | |  | |   | |  |  |   || |  || |   |   ||  | | |   |     || || | |  ||| ||
AAGTTCTATGCTCCTTGCGAAATGCTTACACCAAAAACTTTGGGAGAGTAGTCCATTTTTGCTGAAGCAATTGCCTGGAATTGGAATTGTCACAGCAAAGgtt-attaactttattatctt-tattgggtatgtaattatgtttatgta--tctgcagtctgcataa-ttaatgcttgaggtt---at-cactgtcatcccag

upper sequence: AT3G27730.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GRMZM2G346278_T02 (Zea mays), 5'ss of exon 16
TAGCTCAACTCTTCTTGCAAAATCACTCTATCAAAAGCTCTGGGACGACAGTCCATATTTGCTGAAACAATTGCCTGGCATTGGAATGGTTACAGCTAAGgtttaatctctgtttaagctcgttctctgcaccttaccttttccagatgattcagtggtttttgtttcttggtaccttttgcctgaatacattcttttcctag
||  || |   | ||||||||    ||  |||||||||| |||||   |||||||| | ||||||||||| ||||||| |||||||| || ||||| |||||| | |   | | | |   |  | |   ||| ||    | | |||       | |   || |     |    || |    ||| |                 
TAATTCTATGATCCTTGCAAATAGTCTGCATCAAAAGCTTTGGGAGAGCAGTCCATTTCTGCTGAAACAACTGCCTGGGATTGGAATTGTAACAGCAAAGgtt-attaattttgtgattgctatataaacacttttgtatctgcagtcagcataattaattcttgagttgatcacttgccacctcag----------------

upper sequence: AT3G27730.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA16G07850.1 (Glycine max), 5'ss of exon 19
TAGCTCAACTCTTCTTGCAAAATCACTCTATCAAAAGCTCTGGGACGACAGTCCATATTTGCTGAAACAATTGCCTGGCATTGGAATGGTTACAGCTAAGgtttaatctct--gtttaagctcgttctctgcaccttaccttttc-----cagatgattcagtggtttttgtttcttggtaccttttgcctgaatacattcttttcctag
 |  ||| | ||||| || ||||||||    || ||||| ||||| |||||||||||  | |||||||| || ||||| ||||| ||||||||||| |||||   || | |   ||       ||| |   ||| | |   || |     || ||| |  ||   |    ||| | |  ||   |     ||||    |||||| |    
GAATTCAGCCCTTCTGGCCAAATCACTAGGCCAGAAGCTTTGGGATGACAGTCCATACCTTCTGAAACAGTTACCTGGAATTGGGATGGTTACAGCAAAGgtaacatttattgattcgttgatgttattaacacataattgttactaatacatatgctctagcaatca--gttgcctaatattctaattttgaa---gttctttccag--

upper sequence: AT3G27730.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv14s0066g00880.t01 (Vitis vinifera), 5'ss of exon 19
TAGCTCAACTCTTCTTGCAAAATCACTCTATCAAAAGCTCTGGGACGACAGTCCATATTTGCTGAAACAATTGCCTGGCATTGGAATGGTTACAGCTAAGgtttaatctctgtttaagctcgttctctgcacct-taccttttccagatgattcagtggtt--tttgtttcttggtaccttttgcctgaataca--ttcttttcctag
 | |||||  |||||  | ||||   |   ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || || |||||||  | | |          |||  |   ||   ||   ||||||  |  |  | |  ||  |||  ||||    |||    | ||   | ||    | || |  ||
GAACTCAATCCTTCTGTCCAAATGTTTACTTCAAAAGCTCTGGGACGACAGTCCATACTTGCTGAAACAATTACCTGGCATTGGAATGGTGACTGCAAAGgttttctttattggcttctcagtttccattacaaatatgatttccatgtcttgaattacttaattttcttctcctcaccccccgtcttcctccaagcacattcctcag