1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTATTCAACAACCCTAATGCATCTGTTTCAGACATGGATGTATCCTCTAGCAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGAgttagtttcttaaaccctcttttgagtctttctatctcattttgcaaaacaaatgttagtgtttcgttttttccacaaagcagtatgaataaaactctaactcaagattgatcttaaatgcag
species | Arabidopsis thaliana |
transcript | AT3G20630.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGA AATACAAGCTGTTTGGAATAGTAAGTCACATGGGAACATCAGTGCACTGTGEST: gi|124860312|gb|EH944749.1|EH944749
genomic: CAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGAgttagtttct ... ttaaatgcagAATACAAGCTGTTTGGAATAGTAAGTCACATGGGAACATCAGTGCACTGTG
EST: CAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGA AATACAAGCTGTTTG
genomic: CAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGAgttagtttct ... ttaaatgcagAATACAAGCTGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTCAACAACCCTAATGCATCTGTTTCAGACATGGATGTATCCTCTAGCAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGAgttagtttcttaaaccctcttttgagtctttctatctcattttgcaaaacaaatgttagtgtttcgttttttccacaaagcagtatgaataaaactctaactcaagattgatcttaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG