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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAAGCTTGTTACTGGGTTTTCTTCAATCCAGGGTCACAAGCCCGGTGCCCGTGACTTGAACGCTGTCGTGGACTGGCAACAACAGTCCGGTTACCTGgtttgtgatttcttcaatcatgctatgcacgatatttcttcttagttttccaagttacgaagcctgatttattgttatttacgggttactggtatttaacag

Basic information

species Arabidopsis thaliana
transcript AT3G08850.1
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124944693|gb|EL020770.1|EL020770
EST:     GAACGCTGTCGTGGACTGGCAACAACAGTCCGGTTACCTG                         TATGCTTCTGGGGAGACGTCAACAGTCACACTTTGGGACCTGGAGAAAGAA
genomic: GAACGCTGTCGTGGACTGGCAACAACAGTCCGGTTACCTGgtttgtgatt ... tatttaacagTATGCTTCTGGGGAGACGTCAACAGTCACACTTTGGGACCTGGAGAAAGAA
EST: gi|47829931|gb|CK119615.1|CK119615
EST:     CCCGTGACTTGAACGCTGTCGTGGACTGGCAACAACAGTCCGGTTACCTG                         TATGCTTCTGGGGAGACGTCAACAGTCACACTTTGGGACCTGGAGAAAGAA
genomic: CCCGTGACTTGAACGCTGTCGTGGACTGGCAACAACAGTCCGGTTACCTGgtttgtgatt ... tatttaacagTATGCTTCTGGGGAGACGTCAACAGTCACACTTTGGGACCTGGAGAAAGAA