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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCCAGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGgtatagtaaacaattatagtaaattgttttgtataacattttgctttatcctttccccatctcacctgttaccaattttcag

Basic information

species Arabidopsis thaliana
transcript AT3G05970.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 10
AAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCCAGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGgtatagtaaacaattata-gtaaattgttttgtataacattttgctttatcctttccccatctcacctgttaccaattttcag
|||||||| ||||| || || || || || || |||||||||||||| |||||||| ||||||||||||||||| ||  | | ||| || || ||||||||||   |  |  ||| |  ||    | | |     | || ||      |  | |   | |  || | |||| |    || |||
AAGAACATTTTCAAGTTAGCTCAAGGAGAATACATAGCTCCAGAGAAGATTGAAAATGTCTATGCCAAATGCAAGTTCATTGCCCAATGTTTTATATATGgtaatatttatgattctgtgttggctatatgac-catcagttatggccaagcatgttctaaatctcttgtttcgg--ttgcag

upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 19
AAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCCAGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGgtatagtaaacaattatagtaaattgttttgtataacattttgctttatcctttccccatctcacctgttaccaattttcag
||||| ||||| || ||||| || |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||  || |||||  |||||||||| | ||  ||| ||    |    ||  || |    |  |  ||| | ||  |    |    | | ||     |||  ||
AAGAATATCTTTAAGTTGGCACAAGGGGAGTACATTGCTCCTGAGAAGATTGAAAACGTATATGCCAAATGCAAATTTGTGGCGCAATGCTTTGTATATGgtatggaaataaatcattcccacaaattcagtgtg-tgtggtcatttgtactagcttgttgatgcttcttttttctttgtag

upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 19
AAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCCAGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGgtatagtaaacaattatagtaaattgttttgtataacattttgctttatcctttccccatctcacctgttaccaattttcag
||||| ||||| || ||||| || || ||||| || ||||| ||||| |||||||| || || |||||||||||||||||||  ||||||||  |||||||||  | ||  ||| ||    |    ||  || |    |  |  ||| | ||  |    |    | | ||     |||  ||
AAGAATATCTTTAAGTTGGCACAAGGCGAGTACATTGCTCCTGAGAAGATTGAAAATGTATACGCCAAATGCAAATTTGTGGCGCAGTGCTTTGTATATGgtaaggaaataaatcattcccacaaattcggtgtg-tgtgatcgtttgtactagcttgctgatgcttcttttttgtttgtag

upper sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 19
AAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCCAGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGgtatagtaaacaattatagtaaattgttttgtataacattttgctttatcctttccccatctcacctgttaccaattttcag
|||||||| || || ||||| || || ||||| |||||||||||||||||||| || || ||||| |||||||||||||| | |||||||||  |||||||||    |||  |  ||  || |    | | | | |  |||||| |       | |  || ||  ||| |   |        
AAGAACATTTTTAAGTTGGCACAAGGAGAGTACATAGCTCCAGAGAAAATTGAGAATGTATATGCTAAATGCAAATTTGTTGCCCAGTGCTTTGTATATGgtaagaaaaatgag-attttacaaatctctctttcatcttttgcct-gctgactgcttatttc-tctgatgatag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084757|gb|DR380516.1|DR380516
EST:     TGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATMTG                         GTGATMGCTTTAATTCATCATTGGTAGCTGTTGTATCGGTTGATCCAGATG
genomic: TGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGgtatagtaaa ... caattttcagGTGATAGCTTTAATTCATCATTGGTAGCTGTTGTATCGGTTGATCCAGATG