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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTCCTGAGAAGGAGTGCCCTGGAACTTTTTATGGTTGACCGTTCAAACTTCTTCTTTGATTTTGGGgtatctgcatctaaaactctttctacgtatgatatatttatctctctgaccttgtaaatctccgcatgctgtaatcaattacttttcccaatttgcttgttttacatcatag

Basic information

species Arabidopsis thaliana
transcript AT2G45540.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45540.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv12s0057g01610.t01 (Vitis vinifera), 5'ss of exon 1
----ATATCTCCTGAGAAG--GAGTGCCCTGGAACTTTTTATGGTTGACCGTTCAAACTTCTTCTTTGA---TTTTGGGgtatctgcatctaaa----------actctttctacgtatgatatatttatctctctgaccttgtaaatctccgcatgctgtaatcaattacttttcccaatttgcttgttttacatcatag
    ||  |   | ||||         |  | ||    |    | |||| | |       ||||    |   ||| |  | |  |   ||   |          |||     ||  ||||||  |||  ||   ||     | | | | |  |    ||| |   |       | |  | |  |||    ||  | ||   
TTGGATTGCAGTTCAGAAATTAGAGATCAAGAAAAGGATAGAAGCTGACTGATGTCTTCCCTTCACCAAATATTTAGCAGAAGATATTTCCTGAGAAGAAgtgcactaaaattatttatgattgattggtcaaacttcttctttgattttgggagcactgaaggaagaagaaatgcatattgagctatagttcgagcacg-

upper sequence: AT2G45540.2 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 18
ATATCTCCTGAGAAGGAGTGCCCTGGAACTTTTTATGGTTGACCGTTCAAACTTCTTCTTTGATTTTGGGgtatctgcatctaaaactctttctacgtatgatatatttatctctctgaccttgtaaatctccgcatgctg-taatcaattacttttcccaatttgcttgttttacatcatag
||||||||||||||| || || || ||| | |||||| ||||||| |||||||||||||||||||||||||||||||  | | ||   || |  || | | || |  ||  || | ||    | |||||     ||||||| |  |   |  | |  | | |                     
ATATCTCCTGAGAAGAAGCGCACTAGAATTATTTATGATTGACCGGTCAAACTTCTTCTTTGATTTTGGGgtatctg--tttgaa---ctgtgcacttgtcatttcctttgctttgtgcttatttaaatgcaaacatgctgatggtttctatcctccctccag--------------------