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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGCTTGCATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCgtaagtgacttagtgttgaagagggatttagataatataactagataactctgaatgttacctcatggatttcctttactgtttctctttcttttctccttgaatttacctttcttctgttttaaacattgggatatag

Basic information

species Arabidopsis thaliana
transcript AT2G41740.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os03g24220.2 (Oryza sativa), 5'ss of exon 19
GGAAGGCTTGCATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCgtaagtgacttagtgttgaagaggg-atttagataatataactagataactctgaatgtt--acctcatggatttc-ctttactgtttctctttcttttctccttgaatttacctttcttctgttttaaacattgggatatag
 |||    |   |||| | || ||  | |||||| ||  ||||||||| ||||||||||||||||  |||||||| || ||||||  ||| | | || | ||| |  | |   | || |  |    || |   |     |  |  || | |  |||  ||  |  | |  |||||| | ||        | |||| | |                                            
CGAATCTCTTTCTCCTGATGTGCCTCTGTACAAAGTCGTTGAAGGGAATGAACCATGCTTCTTCAGAACTTACTTCTCCTGGGATAACACAAGATCTGTGgtatgctattggatatttaccactatatctttttttctcagttctatcaattggaactttgtatttaagagatttcaccttggaagcaatttttcgtata-------------------------------------------

upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GRMZM2G047310_T01 (Zea mays), 5'ss of exon 17
GGAAGGCTTGCATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCgtaagtgacttagtgttgaagagggatttagataatataactagataactctgaatgttacctcatggatttcctttactgtttctctttcttttctccttgaatttacctttcttctgttttaaacattgggatatag
 ||||   |   |||  | || ||| | || ||| |||  |||||||| || |||||||||||||  || |||||||||||||||  ||| ||| || | |||  |||  | | | |        ||||   || |||   |       |||     ||      |||  ||| | ||||   ||   ||     ||  |     |||                               
TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgta--tgatgtcg-gctatctttctattt---tattatgcttttgctgttcttgtacttgggc--tgggcttcttgtactcagtccactttggaccttttcctcctta-------------------------------

upper sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 18
GGAAGGCTTGCATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCTTCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCgtaagtgacttagtgttgaagagggatttagataatataactagataactctgaatgttacctcatggatttcctttactgtttctctttcttttctccttgaatttacctttcttctgttttaaacattgggatatag
||| || |||  ||  || || ||| | ||||   | |  ||||| || ||||||||||||||||| |  ||||||||||||||| |||| |||||||  ||| ||| ||     ||||       | |||  || ||  |||               | ||  ||| ||||||||||  | |||| | | |    |  ||||    |  ||| ||||    |                
GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtg-ctgctccttgatt-----tgtagtcaacatttcta---------------tgccagatgaatttccttta--gattctatgtgtggaatgtttgatgaaattttttttcttagct----------------