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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAGAGGGTTTCCATGGCTAGGGCCGTTTACTCAAATTCAGATGTGTACATCTTTGATGACCCGTTAAGTGCCCTTGATGCTCATGTTGGTCAACAGgtactaactcattgattctctttgataaggctagtctatttcatttttgaatttatctaacatttttgtgtctggtcattatgggaatactgtcagtctgatttctaggaatattgtttcag

Basic information

species Arabidopsis thaliana
transcript AT2G34660.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34660.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 19
GAAGCAGAGGGTTTCCATGGCTAGGGCCGTTTACTCAAATTCAGATGTGTACATCTTTGATGACCCGTTAAGTGCCCTTGATGCTCATGTTGGTCAACAGgt-actaactcattgattctctttgata-aggctagtctatttcatttttgaatttatctaacatttttgtgtctggtcattatgggaatactgtcagtctgatttctaggaatattgtttcag
 |||||||| || ||||||||||| || || ||||||||||| |||||||||||||||||||||||  ||||||| || ||||| ||||| | |  |||||| ||   |      |||  ||    || ||  | | ||| |   | |||  |||  |  |   ||      ||  || |||      || || |     |||||                   
AAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCAAATTCTGATGTGTACATCTTTGATGACCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGgttaccttcatgccaattgactcctctatagaatggcctactgt-tgtttctattgcttcagtgttcaaac-tcaagtaattt-----atgctatggtattgattgt-----------------

upper sequence: AT2G34660.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA15G09900.1 (Glycine max), 5'ss of exon 19
GAAGCAGAGGGTTTCCATGGCTAGGGCCGTTTACTCAAATTCAGATGTGTACATCTTTGATGACCCGTTAAGTGCCCTTGATGCTCATGTTGGTCAACAGgt-actaactcattgatt--ctctttgataaggctagtctatttcatttttgaatttatctaacatttttgtgtctggtcattatgggaatactgtcagtctgatttctaggaatattgtttcag
 |||||||| || ||||||||||| || || ||||| ||||| |||||||||||||||||||| ||  ||||||| || ||||| ||||| | |  |||||| ||   |      | |  ||| |  |||      ||   ||  |||  |  | |  ||||||      ||   | |    ||||| | |  | |  |||                        
AAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGTACATCTTTGATGATCCCCTAAGTGCTCTGGATGCGCATGTGGCTAGACAGgttaccttcatgccaactgactcctctatagcttctgttatttctattgcttcagtgttctaactcaaaagtaatttgc---tatggcattgtttttggtcat----------------------

upper sequence: AT2G34660.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 19
GAAGCAGAGGGTTTCCATGGCTAGGGCCGTTTACTCAAATTCAGATGTGTACATCTTTGATGACCCGTTAAGTGCCCTTGATGCTCATGTTGGTCAACAGgtactaactcattgattctctttgataaggctagtctatttcatttttgaatttatctaacatttttgtgtctggtcattatgggaatactgtcagtctgatttctaggaatattgtttcag
 |||||  | ||||||||||||||||| || || || ||||||||||||||||| ||||||||||| |||||||| || ||||||||||| |||| ||||||| | | |   ||      ||  |||| | ||   || || |   | |   |||||    ||| |||| |||   |||| ||    ||   ||  | |||||| ||| |  ||        
AAAGCAACGAGTTTCCATGGCTAGGGCAGTATATTCCAATTCAGATGTGTACATATTTGATGACCCTTTAAGTGCTCTAGATGCTCATGTGGGTCGACAGgtaattatttcatg------ttaaataatgttaaattacttgaggatcgctgttatc----attattgtttcta--cattctgctt-tatactcgatatgatttgtag-atcat--------