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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGGACTGATTGGCGCTGGAACTAATAACGCAAGGATAGCCGGGATGCTTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgtgttcctcattttggtttctgtaccctgcggtaagctgttgttcttgttggaattattgtaactaacttggtaagtcattatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G20580.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os09g15750.1 (Oryza sativa), 5'ss of exon 21
ATTGGGACTGATTGGCGCTGGAACTAATAACGCAAGGATAGCCGGGATGCTTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgt--gttcctcattttggtttctgtaccctgcggtaagctgttgttcttgt-tggaattattgtaactaacttggtaagtcattatgcag--------------
  ||||  |||| || ||||| || || || ||  | ||||| |||||||||||||||||||| || ||||||||||||||     | | ||| || |||||||  |    ||   | |     || | || | |    |   |  || ||||  | |     | |||||   || ||   |  ||| | |                  
CCTGGGCTTGATAGGGGCTGGTACAAACAATGCCCGAATAGCTGGGATGCTTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGTgtaagttcaaatctaaaataaacattttttatctttgttttgccaattattctgatctcatgctgttgtattcaagttt-catatcagtttttttcatttgactttcag

upper sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os06g48640.2 (Oryza sativa), 5'ss of exon 21
ATTGGGACTGATTGGCGCTGGAACTAATAACGCAAGGATAGCCGGGATGCTTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaa-tgtgttcctcattttggtttctgtaccctgcggtaagctgttgttcttgt-tggaattattgtaactaact----tggtaagtcattatgcag--------
  ||||  |||| || ||||| || || || ||  | ||||| |||||||||||||||||||| || ||||||||||||||     | | ||| || ||||||| |      || |  |     | | || | |    |   | ||| || |  | |     | ||| |   || |    |   |  |||||              
CCTGGGCTTGATAGGGGCTGGTACAAACAATGCCCGTATAGCTGGGATGCTTCGGAACCTCTCAAGTTATTATTACAAAGAAGCAGGACATCTGTTTTGTgtaagttcaaatctaaaataaacatttttatctttgttttgccagttattgtgatctcatgctgttgcattcaagtttcatatcagttcatttcatttgacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116466338|gb|EG508930.1|EG508930
EST:     TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
genomic: TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
EST: gi|86081058|gb|DR376815.1|DR376815
EST:     AAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
genomic: AAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
EST: gi|86050679|gb|DR346434.1|DR346434
EST:     TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
genomic: TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGGCTTGTGCACATGGGAAAGGGTCTCTTGACACTC
EST: gi|125192785|gb|EL207739.1|EL207739
EST:     TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGT                         GTGCGTATTGCTCAAGGG
genomic: TTCGGAACCTCTCCAGCTATTATTACAAAGACATGAGTCTTCTCTTCTGTgtaatgtgtt ... cattatgcagGTGCGTATTGCTCAAGGG