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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGGATCCATATTTCAACAAGTTGATCAGGATATTGGCAACTAGGTGCATGACGCAGgtgatgcttccgtgatgactgagtagtaatattgctggtgattttgacaggatatcgccatatttaacattttaaatttattactacgcag

Basic information

species Arabidopsis thaliana
transcript AT2G17510.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17510.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os03g03710.1 (Oryza sativa), 5'ss of exon 19
GGTGAGGATCCATATTTCAACAAGTTGATCAGGATATTGGCAACTAGGTGCATGACGCAGgtgatgcttccgtgatgactgagtagtaatattgctggtgattttgacag--gatatcgccatatttaacattttaaatttattactacgcag
  ||| || ||||| ||||||||| | |||||||| ||||||||||| |||||||| ||||| |     |     |||     |     ||||  |    || |||| ||    |||  |||||   |||  | |         |  || |||
AATGATGACCCATACTTCAACAAGCTTATCAGGATTTTGGCAACTAGATGCATGACACAGgtaagatagctacattga--agctccccctatt--ttaacatattgatagctactatgcccataaccaaccctgttgg------aacacacag

upper sequence: AT2G17510.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA04G39980.1 (Glycine max), 5'ss of exon 19
GGTGAGGATCCATATTTCAACAAGTTGATCAGGATATTGGCAACTAGGTGCATGACGCAGgtgatgcttccgtgatgactgagtagtaatattgctggtgattttgacaggatatcgccatatttaacattttaaatttattactacgcag
||||| |||||||| ||||| ||||| ||| | ||| ||||||||||||||||||| ||||| |    |      ||| |||| |   | |||  | |   ||   | |  | ||      | ||    ||||   ||  ||  |    ||
GGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaa---ttgaatttgaatgagaacctagatt--tagaatttacaagaaaaaataaattgagtttttgttttgttttgttttgtttttag

upper sequence: AT2G17510.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA06G14870.2 (Glycine max), 5'ss of exon 19
GGTGAGGATCCATATTTCAACAAGTTGATCAGGATATTGGCAACTAGGTGCATGACGCAGgtgatgcttccgtgatgactgagtagtaatattgctggtgattttgacaggatatcgccatatttaacattttaaatttattactacgcag
||||| ||||| || ||||| ||||| ||| | ||| ||||||||||||||||||| ||||| |    |   |  ||| |||| |   | |||      || |||   |  |||       | || | |||||   ||||||  ||     
GGTGATGATCCTTACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGACTCAGgtaaa---ttgattttgaatgagaacccagattta----gaatttacaaaaataa------aattgagattttgt-tttatttttag----