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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAGAGAGTTTCAATGGCTAGGGCAGTCTACTCAAATTCAGATATTTACATATTTGATGATCCTTTCAGTGCTTTAGATGCTCATGTTGCTCACCAGgtattcttatggttgatccataacataactgataatatctcaaggctgacataaatcgcattgataactaatgtgtgtttagccattttcatgatttcatttctcatctaatgacagacttctctgaatcaagttag

Basic information

species Arabidopsis thaliana
transcript AT1G30420.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 19
GAAGCAGAGAGTTTCAATGGCTAGGGCAGTCTACTCAAATTCAGATATTTACATATTTGATGATCCTTTCAGTGCTTTAGATGCTCATGTTGCTCACCAGgtattcttatggttgatccataacataactgataatatctcaaggctgacataaatcgcattgataactaatgtgtgtttagccattt-tcatgatttcatttctcatctaatgacagacttctctgaatcaagttag
 || |||||||| |||||||| || || || || ||  |||||||| | |||||||||||||||||  | ||||| |||||||| ||||||| ||  |||||    | ||      |   || ||   | | | ||   |  |   | |||     | |     || | ||| ||    | ||  ||  | ||| | ||| |  |                                 
AAAACAGAGAGTCTCAATGGCAAGAGCTGTTTATTCTGATTCAGATGTCTACATATTTGATGATCCACTGAGTGCATTAGATGCCCATGTTGGTCGACAGgtgcattcatc-----ttgctaccactgcggttcatgctttcaattttacagtctcccccgcattatcaaatctgccagtggcagttggtaatggtgtcaatgtt---------------------------------

upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 19
GAAGCAGAGAGTTTCAATGGCTAGGGCAGTCTACTCAAATTCAGATATTTACATATTTGATGATCCTTTCAGTGCTTTAGATGCTCATGTTGCTCACCAGgtattcttatggttgatccataacataactgataatatc-tcaaggctgacataaatcgcattgataactaatgtgtgtttagccattttcatgatttcatttctcatctaatgacagacttctctgaatcaagttag
|||||| |||||||||||||| || || || || ||  |||||||| | |||||||||||||||||  ||||||| |||||||| |||||||  |  |||||    | |   |   | | |    |  ||  |  |||  || |  || |||||  |   |  ||| |   ||  ||    | |||| ||  |   ||   ||                                   
GAAGCAAAGAGTTTCAATGGCAAGAGCTGTGTATTCTGATTCAGATGTGTACATATTTGATGATCCACTCAGTGCATTAGATGCCCATGTTGGCCGGCAGgtgaattcaccatct-tgcttgtggtttctatttttatgatctatactcacatac-tgaaaaggatgaaccat-cgttcagatccatgttattaggttacctt-----------------------------------

upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 21
GAAGCAGAGAGTTTCAATGGCTAGGGCAGTCTACTCAAATTCAGATATTTACATATTTGATGATCCTTTCAGTGCTTTAGATGCTCATGTTGCTCACCAGgtattcttatggttgatccataacataactgataatatctcaaggct--gacataaatcgcattgataa---ctaatgtgtgtttagccattttcatgatttcatttctcatctaatgacagacttctctgaatcaagttag
 ||||| |||||||| || |||||||| || ||||||||||| ||||| || ||||||||||||||||| |||||| | ||||||||| |||||||  ||||||  |  |  ||  |  || |       ||| | |  || | | |  |  |||| |  |||  ||     |||  ||   ||     |  ||||  | |                                         
AAAGCAAAGAGTTTCCATAGCTAGGGCTGTATACTCAAATTCGGATATATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATATTGCTCAAGAGgtatcttccttatttctt-atcaagctctagatgacaagtccatgttatggtataagtaccatctatggaggctagggtacattggttgaaattcaaaaat-----------------------------------------

upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 1
GAAGCAGAGAGTTTCAATGGCTAGGGCAGTCTACTCAAATTCAGATATTTACATATTTGATGATCCTTTCAGTGCTTTAGATGCTCATGTTGCTCACCAGgtattcttatggttgatccataacataactgataatatctcaaggctgacataaatcgcat-tgataactaatgtgtgtttagccattttcatgatttcatttctcatctaatgacagacttctctgaatcaagttag
                |||||||||||||| || || || |||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||| ||  ||  |    | |||  ||  |  |||  ||   |      ||  || || || | || |   ||| | |     |||| | |      ||                                    
----------------ATGGCTAGGGCAGTATATTCCAAGTCAGATATATACATATTTGATGATCCTTTAAGTGCTCTAGATGCACATGTTGCTCAACAGgtattctaatatttc-ttttcaccatttctatttctattgcatt-ccactccaagccgaatatggttaccataatgtatgtgatattttttaagcccatgtt------------------------------------

upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 20
GAAGCAGAGAGTTTCAATGGCTAGGGCAGTCTACTCAAATTCAGATATTTACATATTTGATGATCCTTTCAGTGCTTTAGATGCTCATGTTGCTCACCAGgtattcttatggttgatccataacataactgataatatctcaaggctgacataaatcgcattgataactaatgtgtgtttagccattttcatgatttcatttctcatctaatgacagacttctctgaatcaagttag
 ||||| |||||||||||||||||||| || || || ||||||||| | |||||||| ||||| ||||| |||||| ||||||||||||| ||||| |||||||| | |   |     || | |   |    | |||| ||     | ||||   || ||  | |    ||| | | ||  |   ||||   || | ||| |  | ||   |||                       
AAAGCAAAGAGTTTCAATGGCTAGGGCTGTATATTCTAATTCAGATGTATACATATTCGATGACCCTTTAAGTGCTCTAGATGCTCATGTCGCTCAACAGgtattat-agaatcacctcaca-ctccatgattgatatttctg---ttacat---tctcaaagctg---aatattttttctggtgtttt---gagtccatcttacttcagctga-----------------------