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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATGCTGGGGGAGTTATCTCATGCTGAAACCACAAGCGTTGTTATTAGAGGCTCTGTAGCTTATGTTCCTCAAGTTTCGTGGATCTTCAATGCCACTgtgagtcgcctatacttcctgcttgctctgaaaacaaaaactattttatagctttaagtacctttattttcatttggtcaattagttaggcacttaggctggaagtgtcccaatacaagtgcctatgtattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G30410.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 17
GGCAATGCTGGGGGAGTTATCTC--ATGCTGAAACC----ACAAGCGTTGTTATTAGAGGCTCTGTAGCTTATGTTCCTCAAGTTTCGTGGATCTTCAATGCCACTgtgagtcgcctatacttcctgcttgctctgaaaacaaaaactattttatagctttaagtacctttattttcatttggtcaattagttaggcacttaggctggaagtgtcccaatacaagtgcctatgtattgcag
      ||| || ||  || | |   ||     | |    |||   || ||  || | ||  | || |||||||||||||||||||| |||||||||||||| |||||||| | |  |||  |||   ||    |||          ||| ||  | |||| |   | | ||     ||   || | | |  |  |||                                           
------GCTTGGTGAAATACCACCAGTGTCAGGATCGAATACATCGGTGGTCCTTCGTGGAACAGTGGCTTATGTTCCTCAAGTTTCATGGATCTTCAATGCAACTgtgagacaca-atatctcc-atttatgttgattgt------tatattgaaccttttatggcttctacagatataatgtta-tcatctctgcag------------------------------------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 17
GGCAATGCTGGGGGAGTTATCTC--ATGCTGAAACCACAAGC----GTTGTTATTAGAGGCTCTGTAGCTTATGTTCCTCAAGTTTCGTGGATCTTCAATGCCACTgtgagtcgcctatacttcctgcttgctctgaaaacaaaaactattttatagctttaagtacctttattttcatttggtcaattagttaggcacttaggctggaagtgtcccaatacaagtgcctatgtattgcag
      ||| || ||  || | |   |      | ||    |    || || ||| | || || || ||||| |||||||||||||| |||||||||||||| ||||||||    || | || | |  |||   | ||| ||||  |||| | |   ||  |   | ||  | | | |                                                               
------GCTTGGAGAAATACCACCAGTATCTGGATCAGGTACCTCAGTGGTCATTCGTGGATCGGTGGCTTACGTTCCTCAAGTTTCCTGGATCTTCAATGCTACTgtgagat-tctctgctgctttgttgtgtt-aaatcaaaccctatataacttctgcagagatcta-actgtgaccccacag-------------------------------------------------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 18
GGCAATGCTGGGGGAGTTATCTCATGCTGAAACCACAAGCGTTGTTATTAGAGGCTCTGTAGCTTATGTTCCTCAAGTTTCGTGGATCTTCAATGCCACTgtgagtcgcc-tatacttcctgcttgctctgaaaacaaaaactat---tttatagctttaagtaccttta---ttttcatttggtcaattagttaggcacttagg-----ctggaagtgtcccaatacaagtgcctatgtattgcag
 |||||||| |||||| |  ||| |     |    |||| |||||||| |||||  |||| || |||||||||||| |||| ||||| |||||||||||||| |||  |   || |||      |  | ||  | || | |   |   |    ||||   |||   |  |    | |        || |   |||  || ||        ||| ||    |  |     | ||| ||| || | |||
AGCAATGCTTGGGGAGCTGCCTCCTTTGTCAGATGCAAGTGTTGTTATCAGAGGGACTGTTGCATATGTTCCTCAAATTTCATGGATTTTCAATGCCACTgtaagtttcagcatgcttggattctcttatggtatcagatatcttagctaagcagctgccagtgtttacaacactctgggccttgcagtattttattcatttccaattcactgcaaaatgcggaccttgaatgcttat-taatacag

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv10s0003g04450.t01 (Vitis vinifera), 5'ss of exon 6
GGCAATGCTGGGGGAGTTATCTCATGCTGAAACCACAAGCGTTGTTATTAGAGGCTCTGTAGCTTATGTTCCTCAAGTTTCGTGGATCTTCAATGCCACTgtgagtcgcc-------tatacttcctgcttgctctgaaaacaaaaactattttatagc----tttaagtacctttattt-tcatttggtcaat-tagttaggcactta--ggctggaagtgtcccaatacaagtgcctatgtattgcag
 |||||||| |||||| |  ||| ||| | |    |||| ||||||||||||||  |||| |||||||||||| ||||||| ||||| |||||||||||||||||| ||        | || |   || ||    || | |    | |||  |  | ||    |||  | || ||  |   || | | || ||| |  |       |||     || |  |  |  |     |  |  | |   || |||
AGCAATGCTTGGGGAGCTGCCTCCTGCAGCAGATGCAAGTGTTGTTATTAGAGGGGCTGTTGCTTATGTTCCTGAAGTTTCATGGATTTTCAATGCCACTgtgagttgctggatgcttgtattctttggttctgttgcatagcttagctagatactggccatattttggaacattagtggatcttatagtgaatctcatccattttttaccaattgcacatcgctgaccttcaaagtttgt-ccttacag