1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GTGCAATGGCGTGCCCTGGACGAGATCAATGCTGGAGTTTGTGATGGGATGACATATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGAgtaagtgacttgatcaaatccgtatatgtaatgtaaaaaagtgttactagcagctatcccctcgtagaacagaaaataaactctcagacttctctacctcatcttgtggtgcatatgactgcag
species | Arabidopsis thaliana |
transcript | AT1G07110.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: TGCCAGAAGAATACGA ATCTCGAAAAAAGGACAAATTACGATACCGATACCCTCGTGGAGAGTCCTAEST: gi|124956129|gb|EL031083.1|EL031083
genomic: TGCCAGAAGAATACGAgtaagtgact ... atgactgcagATCTCGAAAAAAGGACAAATTACGATACCGATACCCTCGTGGAGAGTCCTA
EST: GATGGGATGACATATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGA ATCTCGAAAAAAGGACAAATTACGATACCGATACCCTCGTGGAGAGTCCTAEST: gi|116416224|gb|EG458816.1|EG458816
genomic: GATGGGATGACATATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGAgtaagtgact ... atgactgcagATCTCGAAAAAAGGACAAATTACGATACCGATACCCTCGTGGAGAGTCCTA
EST: GATGGGATGACATATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGA ATCTCGAAAAAAGGACAAATTACGATACCGATACCCTCGTGGAGAGTCCTAEST: gi|124761435|gb|EH851565.1|EH851565
genomic: GATGGGATGACATATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGAgtaagtgact ... atgactgcagATCTCGAAAAAAGGACAAATTACGATACCGATACCCTCGTGGAGAGTCCTA
EST: TATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGA ATCTCGAAAAAAGGACAAATTACGATACCGATACCCT
genomic: TATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGAgtaagtgact ... atgactgcagATCTCGAAAAAAGGACAAATTACGATACCGATACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCAATGGCGTGCCCTGGACGAGATCAATGCTGGAGTTTGTGATGGGATGACATATGAAGAGGTAAAGAAGAACATGCCAGAAGAATACGAgtaagtgacttgatcaaatccgtatatgtaatgtaaaaaagtgttactagcagctatcccctcgtagaacagaaaataaactctcagacttctctacctcatcttgtggtgcatatgactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC