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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGAGGCTATCTGCTTGCGAGACAATGGGCTCTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAGgtgtgatttgtgtttacaaatctgagttcgctccatgttagagttagactcagtgaacagtttccccacttgctgatactaaatcttttttctttttaaag

Basic information

species Arabidopsis thaliana
transcript AT5G57110.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 16
GTGCGGAGGCTATCTGCTTGCGAGACAATGGGCTCTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAGgtgtgatttg----tgtttacaaatctgagttcgctccatgttagagttagactcagtgaacagtttccccacttgctgatactaaatcttttttctttttaaag
||  ||||||| ||||| |||||||| |||||||||||||| || || ||||| ||||| ||||| ||| | ||| ||||||||||  | | ||    |||||  | || |   ||    | || ||    |   |||   |  |     | |      |    |   || | ||| || ||||     
GTAAGGAGGCTTTCTGCCTGCGAGACCATGGGCTCTGCCACAACCATATGCAGTGATAAGACTGGTACATTGACTATGAATCAGgttagttgtggtgctgttttgatatattgatttaaacaatatttctttgtaactacttacatcaacttcttggagggcacttgcaattgtttcttgtttt-----

upper sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 19
GTGCGGAGGCTATCTGCTTGCGAGACAATGGGCTCTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAGgtgtgatttgtgtttacaaatctgagttcgctcc--atgttagagttagactcagtgaacagtttccccacttgctgatactaaatcttttttctttttaaag
||| ||||||| ||||| || ||||||||||| || ||||| || |||||||| ||||| ||||||||| | ||| ||||||||||  | | ||  || |  | |   |      |    || ||   | ||  ||      ||   ||    |     || | | ||   |||  |  | ||    
GTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGgttagttctg-attcagtattgaaaccctatttataatatttatggtaagctacacatacttgttggagagcacttgttgcaaatattttaattctattgt--

upper sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 16
GTGCGGAGGCTATCTGCTTGCGAGACAATGGGCTCTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAGgtgtgatttgtgtttacaaatctgagttcgctccatgttagagttagactcagtgaacagtttccccacttgctgatactaaatcttttttctttttaaag
||| ||||||| ||||| || ||||||||||| || ||||| || |||||||| ||||| ||||||||| | ||| ||||||||||  | | ||  || |  | |   |      ||| | ||     ||      || |                                             
GTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGGTTAgttctg-attcagtattgaaaccctattccctatttataatatttatggtaag--------------------------------------------

upper sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
GTGCGGAGGCTATCTGCTTGCGAGACAATGGGCTCTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAGgtgtgatttgtgtttacaaatctgagttcgctccatgttagagttagactcagtgaacagtttccccacttg---ctgatactaaatcttttttctttttaaag
|| |||||||| |||||||| ||||| ||||||||| |||| ||||||||||| ||||| || ||||| |||||| ||||||||||    | | ||   |  | | | | | |      ||| |   | |    | |      | ||    | |||    |||   | ||  || ||| |||| |   
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattacttt-attacatattttgtca--ctgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttatttattttgagt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481548|gb|EG524140.1|EG524140
EST:     CTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAG                         ATGACTGTGGTTGAGTCTTATGCTGGGGGCAAGAAAACAGATACTGAACAA
genomic: CTGCCACCACTATTTGCAGCGATAAAACTGGAACACTAACTCTGAATCAGgtgtgatttg ... ctttttaaagATGACTGTGGTTGAGTCTTATGCTGGGGGCAAGAAAACAGATACTGAACAA