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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag

Basic information

species Arabidopsis thaliana
transcript AT5G50310.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 15
CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgtt---ctgtccttggcatgatatgattcacatgttggcattgtag
||||||||| |  |||  |||||||| ||| | ||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||     || | |   | | || |     |||  | ||         | || || | ||  |     ||  |     | ||    | |||     ||||      
CCTGGAGAATCACTGAGAGATTTCTACAAGAGGACAAATATGTACTGGCAAATGGCTGCCTATGAGCACACTCAACACACTGGAAAGgt-----tagtttccatttctcgaatttccat-cattggtcagctagtatatcatccttaataaaacgtgttgcatgtaatcctgtacacccaacggcag-----

upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 18
CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag-
|| |||||| | |||||||||||||| | ||| ||||||||||| ||||||||||| ||| | || ||||| ||||| ||||| || ||| | ||  ||| | |  ||     |   || | ||  ||| |||   |  |   ||  |       ||   ||  | | | | |    ||  ||||||   
CCAGGAGAATCCTTGAAGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttttctctcttttctttctctagttatgtgatt-ctcttataacttccc-tttaatataaattttctaattctctaaattaatcattc-cattgttat

upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 17
-------------CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatga-ctcata--tttgta-gcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag
             || |||||| | |||| ||||||||| | ||| ||||||||||| ||||||||||| ||| | || ||||| ||||| ||||| || ||| | ||  ||| | |  ||     |   |||| ||   || |||  ||   | | ||  |  |  | || |||| |  || |||||    |  ||    |    
GTTGCATCCCAAGCCAGGAGAATCCTTGAGGGATTTCTACAGGCGTACAAATATGTATTGGCAAATGGCAGCCCATGAACATACTCAACACACTGGAAAAgtaggttt--tctcttttctttctctagttatatgattctcttataacttcccatgtaaaatcatattatctttggta--atttgatttgttttatgaacctag--

upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 18
CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgtatgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag--
||||||||||| |||||||| ||||||||||| || ||| |||||||||||||||| ||  | ||||| || ||||| ||||| ||||| || | |   |  || ||   || |        |    |     |  ||||   | |    |||| |     || | |||   |    |||   |    |  
CCTGGAGAAACCTTGAAGGACTTCTATAAGCGTACCAATTTGTACTGGCAAATGGCAGCACATGAGCACACTCAACACACTGGAAAGgtctgttca---taagttttaatattagctggtagacattttgctctcttagctcttgttcattgtcttcaatttgct-tgaccaatcaattgaggtgaaggta

upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: EFJ09772 (Selaginella moellendorffii), 5'ss of exon 16
CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgt-atgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag
||||| |||||  |||  ||||| |     || || |  ||||| |||||||||||||| ||||| || |||||||| ||||| ||||| |||    |  | | | ||||  ||  |    | |||     |   | || ||                                                
CCTGGGGAAACGCTGAGAGATTTTTTCTCCCGGACGATCATGTATTGGCAAATGGCTGCTTACGACCACACCCAACACACTGGAAAGgtgatgacgcaggttt-tctttcgctc--gttcttcatgctctttgcatctatcag-----------------------------------------------

upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: EFJ11619 (Selaginella moellendorffii), 5'ss of exon 16
CCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAATGGCTGCCTACGAGCATACCCAACATACTGGCAAGgt-atgcttaatctgtgtgtttcaatcaagcatataatgactcatatttgtagcaactttgttctgtccttggcatgatatgattcacatgttggcattgtag
||||| |||||  |||  ||||| |     || || |  ||||| |||||||||||||| ||||| || |||||||| ||||| ||||| |||    |  | | | ||||  ||  |    | |||     ||  | || ||                                                
CCTGGGGAAACGCTGAGAGATTTTTTCTCCCGGACGATCATGTATTGGCAAATGGCTGCTTACGACCACACCCAACACACTGGAAAGgtgatgacgcaggtttttttttcgctc--gttcttcatgctctttacatctatcag-----------------------------------------------