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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGATTCCCAATGTGCATACTTTTTGGAGGAGATGGAAGTTATATGTCACCCTATAGTCTCCATAGTGATACACTGTTAACAAATCTTCTTGGCCAGgtaagctctctttgtctgcgtggtttttataccaaaatctccactctgaaatctcctaaacgctctccaaatgactattccag

Basic information

species Arabidopsis thaliana
transcript AT5G47020.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47020.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G015291_T01 (Zea mays), 5'ss of exon 9
GAAAAGATTCCCAATGTGCATACTTTTTGGAGGAGATGGAAGTTATATGTCACCCTATAGTCTCCATAGTGATACACTGTTAACAAATCTTCTTGGCCAGgtaagctct--ctttgtctgcg----tggtttttataccaaaatct----ccactct--gaaatctcctaaacgctctccaaatgacta----ttccag-
||| || || || |||||  || ||||||| || |||||||| |||||||| || ||   ||| |||||||||||| || || |||||||||||||||||||||  ||    ||||     |    |    |||||        ||    |  |||    |||| |  |    |     ||  | | ||     ||||  
GAAGAGGTTTCCCATGTGTCTAATTTTTGGTGGTGATGGAAGCTATATGTCCCCATACTATCTACATAGTGATACATTGCTATCAAATCTTCTTGGCCAGgtaaattcagattttgctgatgataataccatttatgtttgggactgctccagctccagaaaatttggtgttggtggagcaggtcattaggtgctccaaa

upper sequence: AT5G47020.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
GAAAAGATTCCCAATGTGCATACTTTTTGGAGGAGATGGAAGTTATATGTCACCCTATAGTCTCCATAGTGATACACTGTTAACAAATCTTCTTGGCCAGgta-------agctctctttgtctgcgtggttttta-----taccaaaatc-tccactctgaaatctcctaaacgctctccaaatgactattccag
||| |||||||| ||||||||  |||| || || |||||||| |||||||| || |||| |||  | ||||| ||| | || ||||||||||||||||||||        |||    ||| | |  ||  |||| |     ||  | |||  | || |   | || | |   | | | |    ||  | |      
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttttatttctgttcttttgaatagctataacaattgttcatttcaacattttcactatg-tttttgtatacccag-----