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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATTGCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctacactcatattaacgatacctttatccacttttgtcactatatcctgaatatctctaaagtatatgtaaatacag

Basic information

species Arabidopsis thaliana
transcript AT5G13940.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480284|gb|EG522876.1|EG522876
EST:     GCAGCCATACTTAGCACAGTCGTCGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116481915|gb|EG524507.1|EG524507
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116481924|gb|EG524516.1|EG524516
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116480243|gb|EG522835.1|EG522835
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116481923|gb|EG524515.1|EG524515
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116480191|gb|EG522783.1|EG522783
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116481912|gb|EG524504.1|EG524504
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116481910|gb|EG524502.1|EG524502
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116480267|gb|EG522859.1|EG522859
EST:     GCAGCCATACTTAGCACAGTCGTCGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116481918|gb|EG524510.1|EG524510
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116481916|gb|EG524508.1|EG524508
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116480218|gb|EG522810.1|EG522810
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCT
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCT
EST: gi|116481922|gb|EG524514.1|EG524514
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
EST: gi|116480168|gb|EG522760.1|EG522760
EST:     GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCAC                         GTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA
genomic: GCAGCCATACTTAGCACAGTCGTTGCCTACTGCGTTAAAACATATTTCACgtaatctaca ... gtaaatacagGTTTCAAAGAAACTTGGTAGATTATCAAAGTCTTATAACAAGATCTGTGTA